Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03977 ATGCTTAGTCCTGAAGGTGAACTTGAAATAAGTTTTGGCTATCAATGCAATAGGGGTAAAGATATCCCTTTCAAGATTGCCAATGGCTTTGAAATCTTTCCTGAAATGCGCAGAACAAGCAGTTTCTCTTGCTTGTCTGGTGCTGCCTTAAGTGCAAATGCTACACTAGCCAACACAAACATCTGCAATGGTGTGATAGGAGAAGAAATCCTTCCAAGTTTGGACTCTCCTAATTCATTTCGTAGGGTACCCTCTTCACCAAGTCTTCCAAAGTTGGACATACCTTCTCTCCATAGTAGTTTGTCAAACCTAAGTTGCAGCCCATCCACTCCAAGTACTATGCTTGAATATGACCCTTGTTCATTAACATCCATGAGTACTCCTTCCAGAAATGAAGGTTTTCTTAATGCTATGGAAGTACAAGTAGCAGGAGGTGCTGCTGGTGAAGATAGAGTTCAAGCAGTTTGTTCTGAAGAAAATGGATGGCTCTTCTGTGCAATTTATGATGGCTTTAATGGGAGAGATGCTGCTGATTTTCTGGCTGGTACCCTTTATGACACTTTAGTATCCTATTTTAACATGTTATATTGGGATTTGGAACCAGATTCCATCAAAGCTTCTAACAACATGAGTTTGAGTGGATCCTTTGAACATAAATTGGATGATAATCTTATTCTTCCTAAGCATCAATCTCCATCATCAATATTTAAGGGAAACAACAATTCTAGTCTTGGCTGTTTTGCAAACAATAGTCCACCTGCCAAATCAGATGCATCTCATGAATCATTTTCACATGTGGTACTTGATAGCCTCCAACAAGTTCTTAATCAGGTTGAGAATGATTTCTTGTGCATGGTTGAGCAGGAAATGGAGGAACGTCCAGATTTAGTTTGTGTTGGATCTTGTGTTTTACTTGTGCTTCTTCATGGGAATGATTTGTATACACTTAATCTAGGAGACAGCAGAGCAGTCTTGGCAACACACAGTACTGATGACATAATGAATGAGAATGAGAGATTGAAAGCTATCCAACTTACAGATAGTCATACTGTTGACAATGAAACTGAAAAAGCTAAACTTCTTGCTAGTCATCCTAATGATCCAAAGACCATTGTAGCAGGGAAAGTGAAAGGAAAATTGAAGGTTACACGTGCTATTGGAGTTGGCTACTTGAAAAAGAAAATTCTGAATGATGCATTGATGGGAATCCTTCGAGTTAGTAATCTTATAAGCCCGCCATATATCTCAACTGATCCATCACTGAATGTGCATAAAATCTCAAATTGTGATCAATTTGTTATAGTTGGAAGTGATGGTTTATTTGACTTCTTCAGCAATGATGAAGCAGTACAACTTGTGGAGTCTTATATATTGAGCAATCCTTTTGGTGATCCTGCAAAATTTCTTATTGAGCAACTAGTAGCAAGAGCAGCTGATTCTGCAGGTCATCCTTTTGCTAGATCTAATTTTATTTGCATGAATAAAAATTTATGTTGTTTTATTATCAGTTACCTAAGTGGTGATTCTCTTACAGGTTTCAGCATGGAAGAGTTGATGAATATTCCAGCTGGGAGGAGAAGGAAGTACCATGATGATGTGACTGTAATTGTGATCATCCTTGGGATGAATCAACGGACTTCAAAGGCATCAACTTGCATCTAA 1662 0.3833 MLSPEGELEISFGYQCNRGKDIPFKIANGFEIFPEMRRTSSFSCLSGAALSANATLANTNICNGVIGEEILPSLDSPNSFRRVPSSPSLPKLDIPSLHSSLSNLSCSPSTPSTMLEYDPCSLTSMSTPSRNEGFLNAMEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYDTLVSYFNMLYWDLEPDSIKASNNMSLSGSFEHKLDDNLILPKHQSPSSIFKGNNNSSLGCFANNSPPAKSDASHESFSHVVLDSLQQVLNQVENDFLCMVEQEMEERPDLVCVGSCVLLVLLHGNDLYTLNLGDSRAVLATHSTDDIMNENERLKAIQLTDSHTVDNETEKAKLLASHPNDPKTIVAGKVKGKLKVTRAIGVGYLKKKILNDALMGILRVSNLISPPYISTDPSLNVHKISNCDQFVIVGSDGLFDFFSNDEAVQLVESYILSNPFGDPAKFLIEQLVARAADSAGHPFARSNFICMNKNLCCFIISYLSGDSLTGFSMEELMNIPAGRRRKYHDDVTVIVIILGMNQRTSKASTCI. 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03977 553 Gene3D - 107 549 IPR036457 -
Seca6g03977 553 SUPERFAMILY PP2C-like 147 541 IPR036457 -
Seca6g03977 553 PANTHER PROTEIN PHOSPHATASE 2C 142 538 IPR015655 GO:0004722|GO:0006470
Seca6g03977 553 SMART PP2C_4 125 538 IPR001932 -
Seca6g03977 553 CDD PP2Cc 147 483 IPR001932 -
Seca6g03977 553 Pfam Protein phosphatase 2C 230 474 IPR001932 -
Seca6g03977 553 ProSiteProfiles PPM-type phosphatase domain profile. 134 540 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03977 Seca-Chr6 107466331 107468551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03977 4 553 PP2C-type Phosphatase Gene Family AT3G16560 59.319 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03977 - - gmx:100791404 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03977 6 107466331 107468551 Seca6g03977 6 107466331 107468551 ECH
Seca12g00329 12 2937663 2940948 Seca6g03977 6 107466331 107468551 PCT