Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03966 ATGTTGAGTTCTCAACGCTTCAAACCCCTTCTTCTTCATCATCTAAAGGGAATACCCTTTCAAACCCCAAAAGTGAATCCTTTTGTATCAACACTCTCTTTAAAACACAGCACCACAACCACCTCTGATCAAAACCAATTCACGCTTTCTTATCTCACAACCAATTGCGGATTCTCACCAGAAATTGCTCGCAAGACTTCCAAGCAAGTTCGTTTCGACAGTGCCGAAAAGCCCGACTCAGTCATCGCTTGCTTCAGAAACCACGGCTTCTCTGACTCTGACATTAGAAGCATCCTTAGAAACGCACCCAACGTGCTCGCATGCGACCCCAACAAAAGGATTTTGCCAAAGTTTGAATTTTTACGCTCCAAAGGTGCTTCGAGCTCTGACATTGTGCAGATCGTGAGCAGGAGCCCTAGAATCCTGTATTCAAGCCTCGAGAAAAGCATAATCCCTACCTATGAGTTGTTGAGAAGGTTCCTTCAATCTGATGCGAAAATTATTGATCGTATACTTACTTGTCGATATGTCTTTGGTAACGATCTTGTTGTAAGGAATGTGGGGTTGTTGCTTGATGATGGAGTCACGGACTCAAACATCACCTATTTGTTAGGGAGAAGACCATCTATACTCATGTCTTATGACCTGAGAAGGGCTTTGGATGAGGTTAAGGATATGGGGTTTGATCCTTCTAAGATTACTTTTGGTGTAGCTTTGCTAGCCAAGAGGGCCATTTCCAAATCCCAATGGGATTCAAAAGTTGATGAGTTCAAGAGATGGGGTTGGTCTGAAGAAATGGTTCTTGATGCGTTTAGGAGGAGGCCCTTCTGTATGCTTGTGTCCAAGGATAAAATTAGTGAGGTGATGAGATTTTGGGTCAATCAGATGGGTTGGAACTCTTTTGACCTTGTAAAAAGGCCAGAGATTTTTTCATATAGTTTGGAGAAAAGGGTCATTCCGAGGGCTTTTGTTGTCCACTATTTGATCTCAAAAGGTTTGAGAAAAAATAATGTCTATGAATTGTCTACCCCATTTGCTGTTACTGAAAAGTTGTTTCTTGAAAAGTATGTGAAATGTTTTAAGGAGGAAAGGTATCAACTGTTAAAGCTATACCAGGAAAAAATGAGTGTTCAAAAGAAAGGGAGGATGGTAGCTATCAATTAG 1164 0.4141 MLSSQRFKPLLLHHLKGIPFQTPKVNPFVSTLSLKHSTTTTSDQNQFTLSYLTTNCGFSPEIARKTSKQVRFDSAEKPDSVIACFRNHGFSDSDIRSILRNAPNVLACDPNKRILPKFEFLRSKGASSSDIVQIVSRSPRILYSSLEKSIIPTYELLRRFLQSDAKIIDRILTCRYVFGNDLVVRNVGLLLDDGVTDSNITYLLGRRPSILMSYDLRRALDEVKDMGFDPSKITFGVALLAKRAISKSQWDSKVDEFKRWGWSEEMVLDAFRRRPFCMLVSKDKISEVMRFWVNQMGWNSFDLVKRPEIFSYSLEKRVIPRAFVVHYLISKGLRKNNVYELSTPFAVTEKLFLEKYVKCFKEERYQLLKLYQEKMSVQKKGRMVAIN. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03966 387 FunFam Mitochondrial transcription termination factor-like 146 364 - -
Seca6g03966 387 Pfam mTERF 246 350 IPR003690 GO:0003690|GO:0006355
Seca6g03966 387 Pfam mTERF 84 220 IPR003690 GO:0003690|GO:0006355
Seca6g03966 387 SMART mt_12 132 163 IPR003690 GO:0003690|GO:0006355
Seca6g03966 387 SMART mt_12 300 334 IPR003690 GO:0003690|GO:0006355
Seca6g03966 387 SMART mt_12 96 127 IPR003690 GO:0003690|GO:0006355
Seca6g03966 387 SMART mt_12 201 229 IPR003690 GO:0003690|GO:0006355
Seca6g03966 387 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Seca6g03966 387 Gene3D Transcription termination factor 3, mitochondrial 163 370 IPR038538 -
Seca6g03966 387 PANTHER CGI-12 PROTEIN-RELATED 44 362 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03966 Seca-Chr6 107391396 107392559 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca6g03966 mTERF 3.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03966 K15032 - gmx:102666739 420.624