Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03965 ATGGTAGCTTGGAAAGGTGTCAGCAAAATCCGGTGGAATGAGAAAGTTGATGTCTTTAAGAAGTGGGGTTGGTCTGATGAGACCATTCTTCGAGCATTTAGGAGGGAGCCTAATGTGATGCTGATATCCAGTGATAAGATTAAGTTGGTGATGAGTTTTTGGGTCAATCATTTGGGTTGGGATGCTCTTGCCCTTACCAAAGGACCAAGGATTATTGGGTATAGCTTGAAAACGTTTCGTTCTTGTATCCATAAAATCATGTTCAATTCCCAACGCTACAGAATCCTTGTCCACCTCAAGCCCCAAAAATTATACCCTCTTTTCCCATTGCCATTGCCATTTTCTCTGAAACTGAAATTCTGCACAAGCACTTCGGAATCGGAATCAGAATCAGAATCTTTCAGGGTATCCTACCTCATCAACAACGTTGGATTCTCCCCAGAAACCGCTCTAAAAACTTCGAAACGATTTTCTTTCAAGACCCCAGAGAAGCCTGATTCGGTTTTAACCTTCTTCAGAAACCATGGTTTTTCAGACTCTAACGGCTGGTCTGATGAGGCCATTCTTCAAACATTTAGGAAGCAGCCTAATGTGATGCTGGTATCCAGTGTTAAGATTAATTTGCTGATGAGTTTTTGGGTCAATCAATTGGGTTGGAATTCCTTGGACCTTGCCACTAGACCAAATATTTTTTTGCTTAGTTTGAAGAAAAGGATCATTCCAAGGGCCTCAGTTCTGCAATTTCTTCTGAAGAAAGGTTTGTGGAAAAAGAATGCAAGCTTACTTGTGCCCTTTACTGTGCCTGAGAAGTTGTTCCTGAGCAAGTTTTTTGGCAGTTTTAACACCAGCACTTCAGATCCTCACTCATTCGCTGTGTCCTACCTCATCAACAATTTTGGCTTCTCACCGGAATCCGCTCTCAAAGCTTCCAAGATTCTTCGTTTCAAGACCTCGGAAAAGCCCGATTCAGTTGTCTCCTTCCTCAGAAACCACGGTTTCCCAGACTCAGATATACGCACCATCATCAGAAGGGAACCGTGGCTCCTCTCTTGCGATGCCAACAAAAGGGTTTTGCCAAAGTTTCAATTTTTTCTCTCCAAAGGCGCTTCTACCTCTGACATTGTTCGCATCGTCACAGGGAACCCCAGATTTGTGAAACTAAGCTTGGAAAATCGTGTACTCCCAGCTTATAATTTGGTAAATAAATTCCTCCAATCTGAGGATAAGGCTCTTAATTCTATAATTTACTGTCCATCTTTGCTTGCTAGTGATGTTTTCACACTTAATGTCAAAAAGTTGGTTGATAATGGTGTGGCCAGTTCCAACATTTCCAGGATCCTTCGTTTGACGCCTTATATTCTATGCTCTGCTACCTTGGGGAAGACGGTGCAGGAATTGAAAGACCTGGGATTTGATCCTTCCAAATCATACTTTGGTGTTGCATTGCTTGCTAAAAGAGCTACAAGCAAATCCAAGTGGGATGAGAAAATTGACACCTATAAGAGGTGGGGTTGGTCTGAAAAAACAATTTTGGAAGCATTTAAGAGGCAGCCAAACTGTATGACAATATCCATTGATAAAATCAATAGGGTGATGCAATTTTGGATTAATGAGTTAGGTTGGGATTCTTCTTACCTTGTCAAGGGACCAGGGATCATTTCATATAGTTTGGAGAAAAGGGTCATTCCAAGGGCCTTGGTTCTCCACTATCTTCTATCCAAAGGTTTGAGAAGCAAGAGTACCAACTTGCTTACACCATTTATGATTTCTGAGAAGCAGTTCTTACATAGAGCGTTTCTGTGCCATAATGTTCTTGGTGTCACAAGTAGATCAACAGCTCCAAGACTTGACCCTCTTCTGCGGCACTTGCCCTTATCATTTTCTCTCACATTCTGCACCACGACCACTTCAGACCCTCACTTGTTCGCTATGTCCTACATCATCAACAATTTTGGGTTCTCACTAGAATCCGCTCTCAAAGCTTCTAAGGGGCTTCGTTTCAAGACCTCAGAAAAGCCCGATTCAGTTGTCACCTTCCTCAGAAACCACGGTTTCCTAGACTCAGATATACGCACCATCATCAGAAGGGAACCGTGGCTCCTCTCATGCGATACCAACAAAAGGGTTTTGCCAAAGTTTCAATTTTTACTCTCCAAAGGTGCTTCCACCTCTGACATTGTTCGCATGGTGGCAACGAACCCCAGATTGCTGAAATTAAGCTTTGAGAATCGTATGATCCCAGCATATAAATTGGTAAATAATTTTTTCCATTCTGAGGATAAGGCCCTTGCTTGTATAATTTATTGTCCGTCTTTGCTTTATAGCAAATTTGTGGCCCTTAATGTCAAATTGTTGGTTGATAATGGTGTGGCCAGTTCCAACATTTCCAGGATCCTTCGTGTGATGCCTTATGGTCTATGCTCTACTGGCTTGGGGAAGACAGTGCAGGAATTGAAAGGCCTGGGATTGGATCCTTCCAAATCATACTTTGGTGATGCATTGCTTGCCAAAAGAGATCAAAACAAATCCAAGTGGGATGAGAAATTTGATACCTTTAAGAGGTGGGGTTGGTCTGAAGAAACAATTTTGGAAGCATTTAGGAAACAGCCACAATGTATGTTAAGATCCAGCGATAAAATCAATAGGGTGATGCAGTTTTGGGTTAATCAGTTAGGTTGGGATTCTTCTTACCTTGTCAAGGGACCAGGGATCTTTTTATATAGTTTGGAGAAAAGAGTCATTCCAAGGGCTAAGGTTGTCCACTATCTTCTATCCAAAGGTTTAAAAAGTGAGAGTGCCAGTTTGGTTTCACCATTTTTTTTGCCTGAGAAGTTGTTCCTGCAAAGATCATACTTTGGTGTTACATTGCTTACCAAAAATAATGTAAGCAAATCCAAGTGGGATGAGAAAATTGATACCTATAAGAGGTGGGGTTGGTCTGAAGAAGAAGTTTTTGATGCATTCAGGAGGCAGCCAAGCTGTATGTTAGCATCCAATGATAAAATCAATAGGGTGATGCAATTTTGGATTAATCAGTTAGGTTGGGATTCTTCTTACCTTGTCAAGGGACCAGTGATCTTTTCATACAGTTTGGAGAAAAGGGTCATTCCAAGGGCCTCGGTTCTCCAATATCTTCTATCTAAAGGTTTGAGAAGCAAGAGAGCTAGCTTGCTTTTACCATTCATGATTTCTGAGAAGCAGTTCTTGCAAAAATTCGTGAAATGTTTTGGTGGAGAGGAAACTTCTCAGCTTATGAAGTTATATAAGGGGAAAATGAATAGTATTGAAGATATTGGAGCACAGGGAAACCATGATATGTCAGGTTCATAG 3330 0.4144 MVAWKGVSKIRWNEKVDVFKKWGWSDETILRAFRREPNVMLISSDKIKLVMSFWVNHLGWDALALTKGPRIIGYSLKTFRSCIHKIMFNSQRYRILVHLKPQKLYPLFPLPLPFSLKLKFCTSTSESESESESFRVSYLINNVGFSPETALKTSKRFSFKTPEKPDSVLTFFRNHGFSDSNGWSDEAILQTFRKQPNVMLVSSVKINLLMSFWVNQLGWNSLDLATRPNIFLLSLKKRIIPRASVLQFLLKKGLWKKNASLLVPFTVPEKLFLSKFFGSFNTSTSDPHSFAVSYLINNFGFSPESALKASKILRFKTSEKPDSVVSFLRNHGFPDSDIRTIIRREPWLLSCDANKRVLPKFQFFLSKGASTSDIVRIVTGNPRFVKLSLENRVLPAYNLVNKFLQSEDKALNSIIYCPSLLASDVFTLNVKKLVDNGVASSNISRILRLTPYILCSATLGKTVQELKDLGFDPSKSYFGVALLAKRATSKSKWDEKIDTYKRWGWSEKTILEAFKRQPNCMTISIDKINRVMQFWINELGWDSSYLVKGPGIISYSLEKRVIPRALVLHYLLSKGLRSKSTNLLTPFMISEKQFLHRAFLCHNVLGVTSRSTAPRLDPLLRHLPLSFSLTFCTTTTSDPHLFAMSYIINNFGFSLESALKASKGLRFKTSEKPDSVVTFLRNHGFLDSDIRTIIRREPWLLSCDTNKRVLPKFQFLLSKGASTSDIVRMVATNPRLLKLSFENRMIPAYKLVNNFFHSEDKALACIIYCPSLLYSKFVALNVKLLVDNGVASSNISRILRVMPYGLCSTGLGKTVQELKGLGLDPSKSYFGDALLAKRDQNKSKWDEKFDTFKRWGWSEETILEAFRKQPQCMLRSSDKINRVMQFWVNQLGWDSSYLVKGPGIFLYSLEKRVIPRAKVVHYLLSKGLKSESASLVSPFFLPEKLFLQRSYFGVTLLTKNNVSKSKWDEKIDTYKRWGWSEEEVFDAFRRQPSCMLASNDKINRVMQFWINQLGWDSSYLVKGPVIFSYSLEKRVIPRASVLQYLLSKGLRSKRASLLLPFMISEKQFLQKFVKCFGGEETSQLMKLYKGKMNSIEDIGAQGNHDMSGS. 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03965 1109 FunFam Mitochondrial transcription termination factor-like 951 1079 - -
Seca6g03965 1109 Pfam mTERF 181 261 IPR003690 GO:0003690|GO:0006355
Seca6g03965 1109 Pfam mTERF 678 804 IPR003690 GO:0003690|GO:0006355
Seca6g03965 1109 Pfam mTERF 12 87 IPR003690 GO:0003690|GO:0006355
Seca6g03965 1109 Pfam mTERF 962 1068 IPR003690 GO:0003690|GO:0006355
Seca6g03965 1109 Pfam mTERF 325 472 IPR003690 GO:0003690|GO:0006355
Seca6g03965 1109 Pfam mTERF 429 594 IPR003690 GO:0003690|GO:0006355
Seca6g03965 1109 Pfam mTERF 781 937 IPR003690 GO:0003690|GO:0006355
Seca6g03965 1109 Gene3D Transcription termination factor 3, mitochondrial 954 1078 IPR038538 -
Seca6g03965 1109 Gene3D Transcription termination factor 3, mitochondrial 429 603 IPR038538 -
Seca6g03965 1109 Gene3D Transcription termination factor 3, mitochondrial 297 428 IPR038538 -
Seca6g03965 1109 Gene3D Transcription termination factor 3, mitochondrial 5 113 IPR038538 -
Seca6g03965 1109 Gene3D Transcription termination factor 3, mitochondrial 776 953 IPR038538 -
Seca6g03965 1109 Gene3D Transcription termination factor 3, mitochondrial 179 282 IPR038538 -
Seca6g03965 1109 PANTHER CGI-12 PROTEIN-RELATED 182 278 IPR003690 GO:0003690|GO:0006355
Seca6g03965 1109 SMART mt_12 691 722 IPR003690 GO:0003690|GO:0006355
Seca6g03965 1109 SMART mt_12 727 762 IPR003690 GO:0003690|GO:0006355
Seca6g03965 1109 SMART mt_12 985 1016 IPR003690 GO:0003690|GO:0006355
Seca6g03965 1109 SMART mt_12 511 542 IPR003690 GO:0003690|GO:0006355
Seca6g03965 1109 SMART mt_12 375 406 IPR003690 GO:0003690|GO:0006355
Seca6g03965 1109 SMART mt_12 863 894 IPR003690 GO:0003690|GO:0006355
Seca6g03965 1109 SMART mt_12 796 824 IPR003690 GO:0003690|GO:0006355
Seca6g03965 1109 SMART mt_12 339 370 IPR003690 GO:0003690|GO:0006355
Seca6g03965 1109 SMART mt_12 895 929 IPR003690 GO:0003690|GO:0006355
Seca6g03965 1109 SMART mt_12 221 255 IPR003690 GO:0003690|GO:0006355
Seca6g03965 1109 SMART mt_12 543 577 IPR003690 GO:0003690|GO:0006355
Seca6g03965 1109 SMART mt_12 444 472 IPR003690 GO:0003690|GO:0006355
Seca6g03965 1109 SMART mt_12 30 61 IPR003690 GO:0003690|GO:0006355
Seca6g03965 1109 SMART mt_12 1017 1051 IPR003690 GO:0003690|GO:0006355
Seca6g03965 1109 FunFam Mitochondrial transcription termination factor-like 741 950 - -
Seca6g03965 1109 FunFam Mitochondrial transcription termination factor-like 389 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03965 Seca-Chr6 107371826 107388615 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca6g03965 mTERF 4.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03965 K15032 - mtr:25488156 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03965 6 107371826 107388615 Seca6g03965 6 107371826 107388615 ECH
Seca12g00314 12 2825542 2829197 Seca6g03965 6 107371826 107388615 PCT