Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03964 ATGTTCAAAGCATTTCTCTACCGAAATGGTTTTGCTATCACAAGAAAATCAACAACCCCAAAACTTGACCCGCTTTTGCGGTACTTGCCGTTTTCATTTTCCCTCACATTCTTCAGCACCACCACTTCAGATTCAGACCCTCACCCATTCGCTGTGTCCTATCTCATCAACAATTTTGGCTTCTCACCAGAATCCGCTCTCAAAGCTTCCAAGCGTTCTCGTTTCAAGACCTCAGAAAAGCCCGATTCAGTTGTCACCTTCTTCAGAAACCACGGTTTCCCTGAGCCAGTTATACGCAGCATCATCAGAAGGGAACCATGGCTCCTTTCATGCGATCTCGACAAAAGGGTTGTGCCAAAGTTTCAATTTTTACTCTCCAAAGGCGCTTCTACCTCTGACGTTGTTCGCATGGCGTCAGGGAGCCCCAGATTCCTGCAATTAAGCTTGGAGAAGAAATTAATCCCAGCATATCAATTTGTAAACAGATTCGTTGAATCTGACGATAGGACTCTTGCTTCTATACTTTACTGTCCAACTTTGCTTTATAGCAAATCTCTTGCAGAGAACGTCAAATTGTTGATTGATAATGGTGTGGCCAGTTCCAACATTTCCAGGATCCTTCGTTTGAAGCCTTATGTTCTATGCTCTACTAAATTGGGGAAGATTGTTCAGGAAGTAAAAGACTTGGGATTTGATCCCTCCAAATCATACTTTGGTGATGCATTGCTTGCCAAAAGAGCCACTAGCAAATCCAAGTGGGATGAGAAAATTGATACCTATAAGAGGTGGGGTTGGTCTGAAGAAACAATTTTGGAAGCATTTAAGAAACAGCCACAATGTATGTTAAGATCCAGCGATAAAATCAATAGGGTAATGCAGTTTTGGGTTAATCAGTTAGGTTGGGATTCTTCTTATCTTGTCAAGGCTCCTGGGATTTTTTCATATAGTTTGGAGAAATGGGTCATACCAAGGGCTTCGGTTGTCCACTATCTTCTATCCAAAGGTTTGAGAAGCAAGAATGCCAGCTTACTTGCACCATTTTTTGTGTCTGAGAAGGTTTTCCTGCAAATGTGTGTGACATGTTTTGATGAGGAGGAAGCTTCTAAGATTTTGAAGTTATATAAGGGAAAAATGAATGTTATAGATAAAGGGACACAGGGGAACCGTGCCATGTCATGTTCATAA 1185 0.4169 MFKAFLYRNGFAITRKSTTPKLDPLLRYLPFSFSLTFFSTTTSDSDPHPFAVSYLINNFGFSPESALKASKRSRFKTSEKPDSVVTFFRNHGFPEPVIRSIIRREPWLLSCDLDKRVVPKFQFLLSKGASTSDVVRMASGSPRFLQLSLEKKLIPAYQFVNRFVESDDRTLASILYCPTLLYSKSLAENVKLLIDNGVASSNISRILRLKPYVLCSTKLGKIVQEVKDLGFDPSKSYFGDALLAKRATSKSKWDEKIDTYKRWGWSEETILEAFKKQPQCMLRSSDKINRVMQFWVNQLGWDSSYLVKAPGIFSYSLEKWVIPRASVVHYLLSKGLRSKNASLLAPFFVSEKVFLQMCVTCFDEEEASKILKLYKGKMNVIDKGTQGNRAMSCS. 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03964 394 Gene3D Transcription termination factor 3, mitochondrial 164 366 IPR038538 -
Seca6g03964 394 SMART mt_12 99 130 IPR003690 GO:0003690|GO:0006355
Seca6g03964 394 SMART mt_12 303 337 IPR003690 GO:0003690|GO:0006355
Seca6g03964 394 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
Seca6g03964 394 SMART mt_12 171 199 IPR003690 GO:0003690|GO:0006355
Seca6g03964 394 SMART mt_12 204 232 IPR003690 GO:0003690|GO:0006355
Seca6g03964 394 SMART mt_12 135 166 IPR003690 GO:0003690|GO:0006355
Seca6g03964 394 FunFam Mitochondrial transcription termination factor-like 149 366 - -
Seca6g03964 394 Pfam mTERF 86 232 IPR003690 GO:0003690|GO:0006355
Seca6g03964 394 Pfam mTERF 248 354 IPR003690 GO:0003690|GO:0006355
Seca6g03964 394 PANTHER CGI-12 PROTEIN-RELATED 48 363 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03964 Seca-Chr6 107366866 107368050 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca6g03964 mTERF 4.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03964 K15032 - mtr:25488156 373.244