Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03963 ATGGTTGATAACATTGGAGGTAGTTCCTCAAACGACAATGGTGGTATCAAGGAACAAGACCGGTTGCTGCCAATAGCCAATGTTGGTCGGATAATGAAGCAGATATTACCTCAGAATGCAAAAATCTCGAAGGAAGCAAAAGAAACAATGCAAGAATGTGTGTCAGAGTTCATAAGCTTTGTGACCAGCGAAGCTTCAGAGAAGTGCAGGAAGGAAAGGAGGAAGACAGTGAATGGTGATGACATTTGTTGGGCCCTTGCAACTCTGGGTTTTGATGACTATGCAGAGCCAATGAGAAGGTACTTGCATAGATATAGAGAACTTGAAGTGGATAAGGTCAATCAAGAAAGAGCCCAAAATAGCAGCCCTCATGAAGAGAAGGATGAACAACAGCTATATAATTCTAAATATCACAACAGTAACAGAGGAGGTGTTAGGCTCTGA 444 0.4212 MVDNIGGSSSNDNGGIKEQDRLLPIANVGRIMKQILPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAEPMRRYLHRYRELEVDKVNQERAQNSSPHEEKDEQQLYNSKYHNSNRGGVRL. 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03963 147 ProSitePatterns NF-YB/HAP3 subunit signature. 53 69 IPR003956 GO:0005634|GO:0006355|GO:0043565
Seca6g03963 147 FunFam Nuclear transcription factor Y subunit B-3 11 136 - -
Seca6g03963 147 MobiDBLite consensus disorder prediction 113 147 - -
Seca6g03963 147 SUPERFAMILY Histone-fold 19 131 IPR009072 GO:0046982
Seca6g03963 147 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Seca6g03963 147 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Seca6g03963 147 PRINTS CCAAT-binding transcription factor subunit A signature 50 68 - -
Seca6g03963 147 MobiDBLite consensus disorder prediction 113 133 - -
Seca6g03963 147 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 22 86 IPR003958 -
Seca6g03963 147 Gene3D Histone, subunit A 10 142 IPR009072 GO:0046982
Seca6g03963 147 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 136 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03963 Seca-Chr6 107354067 107354510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03963 16 115 CCAAT-HAP3 Transcription Factor Family AT2G47810 80.000 3.31e-58 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca6g03963 CBFD_NFYB_HMF 7.6e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03963 K08065 - tcc:18603481 210.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03963 6 107354067 107354510 Seca6g03963 6 107354067 107354510 ECH
Seca12g00312 12 2816342 2816746 Seca6g03963 6 107354067 107354510 PCT