Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03958 ATGTTCAGTCAGAGCATGGATCCTGCAAGGGAAGCGGGTGGTGTTGCAGGGACCGTGCTAATTCCCATGCGTTTTGTGTGGCCATATGGCGGACGAAGTGTGTTTCTCAGTGGTTCTTTCACACGGTGGTCTGAGCTTCTACCAATGTCACCAGTGGAAGGTTGCCCAACTGTATTTCAGGTTATTTATAGCTTGACCCCCGGTTACCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGGCATGATGAGCATCAACCTTATGTACCTGGAGAATATGGGATGGTCAACACTGTCTTCTTGGCTACTGATCCTAACTACATACCTGTTATAACTCCAGACATTGCTTCTGGAAATAACATGGATGTGGATAATGAGGCTTTTCGTCGTATGGTAAGAGTTAGTCATACCTCAGAATTTGTGTTTGTTGTTGTTGACATGGCTGCTCTTTGTATGCTGGCTTTTGGCTATGTTGTTATTTTGAATGAAATTTCAAAGAGAAGTGTTAATACTGTGATCTGTCTGGAGTCTGGAGACAATGTCCGGTTGACAGATGGTACATTGAGTGAGGTGCTGCCAAGAATATCAGATACTGATGTACAGATCTCCCGTCAACGTATTTCTACATATCTGTCTTCACACACTGCTTATGAATTACTTCCTGAGTCAGGCAAGGTTGTTGCCTTGGACGTTGATTTGCCAGTGAAACAAGCATTTCATATACTGCATGAGCAGGGAATTTACATGGCTCCTCTCTGGGACTTGAGCAAGGGGCAATTTGTTGGTGTTCTTAGTGCTTCGGATTTTATCTTAATTTTAAGAGAGCTGGGGAATCATGGATCCAATCTTACAGAAGAGGAGCTTGAAACACATACCATATCGGCTTGGAAAGAAGGAAAGTCATATCTAAACAGACAGAACAATGGACATGGCACTGCATTTTCAAGACGTTTTATCCATGCAGGGCCATATGATAATCTGAAAGAAATTGCCTTGAAGATCTTGCAAAAGGAGGTTTCAACAGTTCCTATTATCCATTCACCTTCTGAAGATGGTTCATTTCCACAGTTGCTACATCTTGCTTCACTTTCAGGAATACTTAAATGCATTTGTAGGTATTTTAGGCATTGCACTAGTTCATTGCCTATACTTCAACTTCCAATCTGTGCAATACCTGTGGGCACGTGGGTGCCCAAAATCGGGGAATCAAATCGGCGGCCTCTAGCAATGTTGAGACCAAACTCTTCTCTTGCTTCAGCCCTAAATTTATTAGTTCAAGCCCAAGTAAGTTCAATACCAATAGTTGATGACAATGACTCATTACTGGATATATATTGTCGGAGTGATATAACGGCTTTGGCAAAGGACAGAGCTTATACGCATATTAATCTCGATGAGATGACTGTTCATCAGGCTTTGCAGTTGGGCCAGGATGCATATAGTCCCTATGAGCTTAGAAGTCAAAGATGTCAGATGTGTTTGCGTTCTGATTCGCTGCAAAAAGTAATGGAACGGTTGGCAAATCCAGGTGTCAGGCGACTTGTTATTGTGGAAGCTGGCAGCAAGCGTGTAGAAGGCATTATTTCATTGAGTGACATATTCAAGTTTTTCCTTGTTTAG 1620 0.4235 MFSQSMDPAREAGGVAGTVLIPMRFVWPYGGRSVFLSGSFTRWSELLPMSPVEGCPTVFQVIYSLTPGYHQYKFFVDGEWRHDEHQPYVPGEYGMVNTVFLATDPNYIPVITPDIASGNNMDVDNEAFRRMVRVSHTSEFVFVVVDMAALCMLAFGYVVILNEISKRSVNTVICLESGDNVRLTDGTLSEVLPRISDTDVQISRQRISTYLSSHTAYELLPESGKVVALDVDLPVKQAFHILHEQGIYMAPLWDLSKGQFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKSYLNRQNNGHGTAFSRRFIHAGPYDNLKEIALKILQKEVSTVPIIHSPSEDGSFPQLLHLASLSGILKCICRYFRHCTSSLPILQLPICAIPVGTWVPKIGESNRRPLAMLRPNSSLASALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDRAYTHINLDEMTVHQALQLGQDAYSPYELRSQRCQMCLRSDSLQKVMERLANPGVRRLVIVEAGSKRVEGIISLSDIFKFFLV. 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03958 539 SUPERFAMILY CBS-domain pair 206 376 IPR046342 -
Seca6g03958 539 CDD E_set_AMPKbeta_like_N 22 100 - -
Seca6g03958 539 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 199 537 - -
Seca6g03958 539 SMART cbs_1 407 455 IPR000644 -
Seca6g03958 539 SMART cbs_1 489 538 IPR000644 -
Seca6g03958 539 SMART cbs_1 225 274 IPR000644 -
Seca6g03958 539 ProSiteProfiles CBS domain profile. 219 281 IPR000644 -
Seca6g03958 539 SUPERFAMILY E set domains 21 102 IPR014756 -
Seca6g03958 539 Gene3D - 387 539 IPR046342 -
Seca6g03958 539 ProSiteProfiles CBS domain profile. 403 460 IPR000644 -
Seca6g03958 539 FunFam Sucrose nonfermenting 4-like protein 18 103 - -
Seca6g03958 539 Pfam CBS domain 492 537 IPR000644 -
Seca6g03958 539 Pfam CBS domain 405 451 IPR000644 -
Seca6g03958 539 Gene3D Immunoglobulins 21 109 IPR013783 -
Seca6g03958 539 ProSiteProfiles CBS domain profile. 485 539 IPR000644 -
Seca6g03958 539 Gene3D - 196 379 IPR046342 -
Seca6g03958 539 SUPERFAMILY CBS-domain pair 404 538 IPR046342 -
Seca6g03958 539 Pfam Glycogen recognition site of AMP-activated protein kinase 21 101 IPR032640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03958 Seca-Chr6 107286163 107295438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03958 17 111 Protein tyrosine phosphatase (PTP) family AT3G01510 31.633 6.86e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03958 - - gmx:100785692 901.353