Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca6g03954 | ATGGAAGCATATGGCGGGTACTTGGTGGATGAGAAAGCCGTTAGAGTTGAGAACATCTTCTTAGGATTTCTCAAAAGCTTCAGATCTGAGAATCGGAACGATCTCCATTACGAAGCGGAGATAGAAGTGATGAAAGCCAACGAATCCAACACCATGTTCATCGATTTCGATCATGTCATAAGATTCAGTGATCTCCTTCAGAAAGCTATCTCTGATGAATATTTGAGGTTTGAACCCTATCTGAAGAACGCCTGTAAGAGGTTTGTTATGGAGCTCAAGCCAACCTTCATATCTGATGATAACCCTAACAGGGACATCAACGTTGCCTTCTACAATATCCCAATCGTCAAGAGGCTGAGGGAATTGGCTACATCAGAAATTGGAAGGCTTGTATCCGTGACAGGAGTGGTAACGAGGACAAGTGAGGTTCGACCTGAGCTTCTCCAAGGGACTTTCAAGTGCCTAGATTGTGGTGGGGTTATAAAGAATGTTGAACAACAATTCAAGTATACTGAGCCAACAATATGTGTGAACGCGACCTGTAACAACCGAGCAAAGTGGGCACTGCTGCGGCAAGAGAGCAAATTTGCTGACTGGCAAAGGGTTAGGATGCAGGAGACATCCAAAGAGATACCTGCAGGCTCCCTGCCTAGGTCATTGGATGTTATTCTTCGTCATGAGATTGTAGAACAGGCCAGGGCTGGTGACACGGTGATTTTCACGGGTACTGTAGTTGTTATACCTGACATATTGGCATTGGCATCTCCTGGAGAGAGATCAGAATGCCGGCGGGAAGCTTCACGCAAGGGTGCTACTGCTGGAAATGAAGGTGTGAGGGGCCTTAGGGCTTTGGGAGTTAGAGACCTCTCCTATCGACTAGCTTTTATTGCCAACTCTGTTCAGATTTGTGATGGTAGAAGAGAAACAGACATCAGGAATAGAAAGAAGGATGCAGATGAAGATGATCAGCAATTTACTGCACAGGAGCTGGATGAAATTCAACGAATGAGGAACACTCCAGATTTCTTCACCAAACTTGTTGAGAGCATTGCTCCAACTGTTTTTGGTCATCCAGATATAAAGCGAGCAATCCTTCTTATGCTTATGGGTGGTGTCCACAAATTAACTCATGAAGGCATCAACCTCAGAGGAGATATAAACGTTTGTGTTGTTGGAGATCCCAGCTGTGCAAAGTCTCAATTTTTGAAGTATACTTCAGGCATAGTTCCAAGGTCTGTGTATACATCTGGGAAATCATCATCTGCTGCTGGCTTGACTGCAACTGTTGCCAAGGAACCAGAAACTGGGGAGTTTTGTATTGAGGCTGGCGCTTTGATGCTTGCCGACAATGGCATTTGCTGCATTGATGAATTTGACAAGATGGACATCAAAGATCAGGTTGCAATTCATGAGGCCATGGAACAGCAGACTATCAGTATCACAAAAGCAGGAATACAAGCAACACTTAATGCTCGTACTTCCATTCTTGCCGCTGCCAACCCTGCTGGGGGACGCTATGATAAGTCTAAACCACTAAAGTATAATGTGGCTCTTCCACCAGCTATACTTTCAAGGTTTGATCTTGTCTATGTTATGATTGATGACCCAGACGATCAGACAGATTACCACATAGCTCATCATATCGTGAGAGTTCATCAAAAGCGTGAAGATGCTCTTGCTCCAGCATTCACTACAGCAGAACTGAAGCGTTACATAGCTTATGCAAAAACTCTTAAACCAAAGCTCACGGCAGATGCCAGAAAATTGCTGGTAGACTCTTATGTTGCTCTCCGTAGAGGTGATACAAATCCTGGGAGTCGGGTTGCATATCGTATGACAGTTAGGCAGTTGGAGGCATTAATTAGGCTGTCGGAGGCCATTGCCCGATGTCATTTGGAAAATCAGGTACAACCTCGTCATGTTCGTTTAGCAGTAAGACTGCTGAAAACATCCATAATAAGTGTGGAGTCCAGTGAGATTGATCTGTCTGAGTTTCAAGAAGCAAACCGGGATGATGGCACAGGTAGTGGCAATGGAAATGATAATAATGGAGACGCTGATGGTCAAGTAGGAAACTCTACAGCTCCGCAAGCTGCTGGAACTGATGAAAATCAAGCAGATGGATCTAACCCTCAAGGGAAGAAGCTTATTATAAGTGATGAATATTTTCAGAGAGTTACCAGAGCCCTTATCATGCGTCTTAGACAGCATGAAGAGACTGTCATACAAGAAGGAACTGGTTTGGCTGGCATGAGGCAACGAGATTTGATTCAATGGTATGTAAACCAGCAAAATGAGAAAAACAATTACAGTTCTATGGAGGAGGCAGCAGCAGAAGTTACCAAAATTAAAGCTATCATAGAGAGTTTAATTAGACGAGAGGGCCATTTGATAGTGGTAGATGATGGTAGGCAAGCAGCAGAAGCTGCAAGTGCAGAGCACTCAGCATCCATATCTAGAAATGATCGAATTTTAGCCGTGGCACCTAATTATGCCATTGATTGA | 2505 | 0.4411 | MEAYGGYLVDEKAVRVENIFLGFLKSFRSENRNDLHYEAEIEVMKANESNTMFIDFDHVIRFSDLLQKAISDEYLRFEPYLKNACKRFVMELKPTFISDDNPNRDINVAFYNIPIVKRLRELATSEIGRLVSVTGVVTRTSEVRPELLQGTFKCLDCGGVIKNVEQQFKYTEPTICVNATCNNRAKWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEQARAGDTVIFTGTVVVIPDILALASPGERSECRREASRKGATAGNEGVRGLRALGVRDLSYRLAFIANSVQICDGRRETDIRNRKKDADEDDQQFTAQELDEIQRMRNTPDFFTKLVESIAPTVFGHPDIKRAILLMLMGGVHKLTHEGINLRGDINVCVVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIKDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKREDALAPAFTTAELKRYIAYAKTLKPKLTADARKLLVDSYVALRRGDTNPGSRVAYRMTVRQLEALIRLSEAIARCHLENQVQPRHVRLAVRLLKTSIISVESSEIDLSEFQEANRDDGTGSGNGNDNNGDADGQVGNSTAPQAAGTDENQADGSNPQGKKLIISDEYFQRVTRALIMRLRQHEETVIQEGTGLAGMRQRDLIQWYVNQQNEKNNYSSMEEAAAEVTKIKAIIESLIRREGHLIVVDDGRQAAEAASAEHSASISRNDRILAVAPNYAID. | 835 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca6g03954 | 834 | Pfam | MCM6 C-terminal winged-helix domain | 714 | 833 | IPR041024 | - | |
| Seca6g03954 | 834 | ProSiteProfiles | MCM family domain profile. | 342 | 548 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca6g03954 | 834 | Gene3D | - | 320 | 657 | IPR027417 | - | |
| Seca6g03954 | 834 | MobiDBLite | consensus disorder prediction | 669 | 712 | - | - | |
| Seca6g03954 | 834 | Pfam | MCM AAA-lid domain | 567 | 652 | IPR041562 | - | |
| Seca6g03954 | 834 | FunFam | DNA helicase | 712 | 834 | - | - | |
| Seca6g03954 | 834 | FunFam | DNA helicase | 327 | 657 | - | - | |
| Seca6g03954 | 834 | ProSitePatterns | MCM family signature. | 451 | 459 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Seca6g03954 | 834 | SUPERFAMILY | Nucleic acid-binding proteins | 20 | 249 | IPR012340 | - | |
| Seca6g03954 | 834 | CDD | MCM6 | 345 | 651 | - | - | |
| Seca6g03954 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 495 | 507 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca6g03954 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 383 | 398 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca6g03954 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 443 | 457 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca6g03954 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 522 | 530 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca6g03954 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 471 | 484 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca6g03954 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 219 | 230 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Seca6g03954 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 166 | 183 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Seca6g03954 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 74 | 86 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Seca6g03954 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 116 | 128 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Seca6g03954 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 277 | 298 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Seca6g03954 | 834 | Gene3D | - | 146 | 197 | - | - | |
| Seca6g03954 | 834 | Gene3D | - | 712 | 834 | - | - | |
| Seca6g03954 | 834 | Gene3D | - | 8 | 115 | - | - | |
| Seca6g03954 | 834 | MobiDBLite | consensus disorder prediction | 664 | 714 | - | - | |
| Seca6g03954 | 834 | Pfam | MCM OB domain | 119 | 247 | IPR033762 | - | |
| Seca6g03954 | 834 | Coils | Coil | 773 | 793 | - | - | |
| Seca6g03954 | 834 | Pfam | MCM P-loop domain | 330 | 552 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca6g03954 | 834 | Gene3D | - | 119 | 247 | IPR012340 | - | |
| Seca6g03954 | 834 | Pfam | MCM N-terminal domain | 19 | 112 | IPR027925 | - | |
| Seca6g03954 | 834 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 352 | 653 | IPR027417 | - | |
| Seca6g03954 | 834 | SMART | mcm | 115 | 653 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca6g03954 | 834 | FunFam | DNA helicase | 146 | 197 | - | - | |
| Seca6g03954 | 834 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 13 | 774 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca6g03954 | Seca-Chr6 | 107256542 | 107262190 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca6g03954 | 1 | 834 | Core DNA Replication Machinery Family | AT5G44635 | 73.380 | 0.0 | 1296 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca6g03954 | K02542 | - | gmx:100787290 | 1404.04 |