Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03943 ATGGCATCTTCCCAGGTTGAAATCGCTTCATCTTCGCCATTCGGTTGCGTTCTGAGGGACCGTAATCGCCGTGATGGATGCAGCAGCAATGTTGCTTTCCAAAGAAACATCAAGAACTTTGTCATGGACCACCTTAACACGTGCATGTCCATGTCCTCTGATTCCTCAACAAACGAGAACAATAACCAGGCTCAGATCAACAATGCTGGTTCTTGGGTTTCAAAATCTGTCAAAAACAACAACAATCTTGCAAGGCTTCGTTTTACAAGAACCAATCACAATGATGACAGCACCACCAGCAGCAACAACAAGAAGGACAAAGATGAATCTTCTTTGGCCTCATTGATCAGCCCCAGGCACTCAAGGCTTCTTGATCGATGGGCTGCAAGACAAGCTCGTGAGATTGTGTCAAATTTGGAGAATGAAGCTGAGTTGTTGTCTATGGACAACACTAACAATAACAACGACATGCTTGTAAGGACATCTAGTTCTACCTCTGATGGGTGCTCCTCTGAAATCCCAAACCTTGGTGCATCTTCCCTTGTTCAGATATGGGAGAAGAGACTCAACCAATCCAATGGATCCAAACCCAGTGGCTCCTCCTCAACAGAGAGGACCAGTCCCAATGCTGCTACTAGTCCCACCTTCAACAACGAGAATGCATTTTCCTCTGTGGAAGAACAATGCAGAGGAGGGTCAGAAGCAGGGGAATGTTCTGAAGGACCATTAGGAAATGAGGAATCTTTTCCTGATTGGGAATCTGATAAGACAGGACAGGGTGATCAATCCATTTCTCCACGAGGGAGGAGGTGTTCTTCAGAGAGTGACAGGGTCAGTGTTGCAGACATTATAAAGAAGCTCACTGCTACAAACCAACCTCAGACTCATCCATTGGTTGGAGATGACAATGATCATGAAGGGTGTAGTAGCAGCGTGGCAAGTTCTCCTTCTAGAGAGCGTGAGGGTGGTTTCACACAAGAACATTCAGAGCAAAGGGCTTTTCCTCAGGTCACTTGTTCCCTGAGAATTAGAGGGCGTCGAGCATTCACTGATTTGCTTATGCAGATGGAGAGTGACAGGAACGTGGAGCTAAAGAACCTGGCAGAACGTGGAGCAGTCTCCAAGTTCACACAAAGAGGTCGCATTCAGTCATTGCTTCGACTTAGATTATTACAACGTGATGTGGCAACTAATGATCCACCTCGCCAGAAACCAACAGCATCTGAAGTGAACAGACAACCACAGGGATCTGCAATTATGCAACTAAGGGAAATATTTAGCACAGGAGCTGAAAATAGAACTACAGTCCAGGCAGAAGGAGCTAACCCAAGAAGTCCTCGTAAGGAGATAGTAAATAACACCACACAATTGGATAACTCCCCCACCTCTAATCAACTCAGCAAAGACACAAGCAACCAGATTGCTAGTGGCACTGCTAATCACTCTACAGAATCCACACAAAAGTCAGTGTCTCAGGCTAGTGTAGATCATAATAGAGAAGAAGCTCATCCAAGTTCAGATGTCAAGTTCCAAGAAACTGGTGTTGAGGCTCAGCCTGATGCCTCGCAGGAAACTGCTGAGGCAACTACATCCATGACAGATTCAAATCTAAATAAGAGGGAGGAAAAGGTAGAGACAAGCAACCAACAGTATGCTACAGCTGAAAGCAGCTTTGATGAGACAGCAGATGAGGAAGAGGAAAGTAACCAGCAGTATGCTGAAACTAGTTATGAAGAGGCAAGTGACCTGAACAATGCTGAAAGCAGTTATGAAGAGATGGTAGAAGAGTTAGAGACCATTGATCAAAATTATGATGAAACTAATTATGATTGGATTAGTGAAATTTCTCGGCCTAGGAGCTATTGGGAAGAGCGTAGGCAAGCTTGGTACAGAGAGATGCTTGACAGTGATTATCAGAATGAGGATATACGGGTGCTTCTTGAAAGAAGAACAGTGTCAACTTTCCTTTCTAGTGACTTCCGGGAAACAATGGATAGATTGATGGAAACTCATAGGGGAACACAAACAAATATAGTTGGTAGTCAAGATGATGAGGAAGACAACCAAGGGTTGATAGAATTTTTACAAGAACGCATCCCTTCTGCAACCACTTCTCAAGTAGATGGAAGAGAGACAGGTGAGGATGAAGAGGAGGAGGAAGAAGAAGAAGAACAGGCAGGGGAACAGGAGCATGAGGGGGAGAGCTTGATGAGTGGTTCGTATCATGAAGTTGGTGACTATTCTAATCAATCCTCATCATGGAGTTACAGAGACAATGAAGCTGGTGATGATTTTGATAGAGTTGTTTCTACATCCTCACAACCTTATCAAGCTCTGTCTTTTGATCAGGATAGTCGGCGATATTCTTCATCCACCAATCATAATTCAATTGAGATGGAACTGATATATGATTTGAGAAGTCATATGGAGCAACTTTATCAGGAGATGTCTGAGCTTAGGAAATCAATAAAGAGCTGCATCGGTATGCAGATGCAATTACAACAATCCTTGAACCATGAGGTTCACACAGTTAAAAAAGAAGGAAAGAAGTCGTCCCATAAAAGGGATCCGAAGAAAGGCAACTGCTGCATTTGCTATGACATGAAAGTTGACTCGCTTTTATACAGGTGTGGACACATGTGTACGTGTCTGAAGTGTGCTAATGAGTTGCAATGGAACAGTGGAAAATGCCCAATATGTCGAGCTAAAATAGTAGATGTTGTTCGAGTGTATATTGATGTTTAG 2745 0.4372 MASSQVEIASSSPFGCVLRDRNRRDGCSSNVAFQRNIKNFVMDHLNTCMSMSSDSSTNENNNQAQINNAGSWVSKSVKNNNNLARLRFTRTNHNDDSTTSSNNKKDKDESSLASLISPRHSRLLDRWAARQAREIVSNLENEAELLSMDNTNNNNDMLVRTSSSTSDGCSSEIPNLGASSLVQIWEKRLNQSNGSKPSGSSSTERTSPNAATSPTFNNENAFSSVEEQCRGGSEAGECSEGPLGNEESFPDWESDKTGQGDQSISPRGRRCSSESDRVSVADIIKKLTATNQPQTHPLVGDDNDHEGCSSSVASSPSREREGGFTQEHSEQRAFPQVTCSLRIRGRRAFTDLLMQMESDRNVELKNLAERGAVSKFTQRGRIQSLLRLRLLQRDVATNDPPRQKPTASEVNRQPQGSAIMQLREIFSTGAENRTTVQAEGANPRSPRKEIVNNTTQLDNSPTSNQLSKDTSNQIASGTANHSTESTQKSVSQASVDHNREEAHPSSDVKFQETGVEAQPDASQETAEATTSMTDSNLNKREEKVETSNQQYATAESSFDETADEEEESNQQYAETSYEEASDLNNAESSYEEMVEELETIDQNYDETNYDWISEISRPRSYWEERRQAWYREMLDSDYQNEDIRVLLERRTVSTFLSSDFRETMDRLMETHRGTQTNIVGSQDDEEDNQGLIEFLQERIPSATTSQVDGRETGEDEEEEEEEEEQAGEQEHEGESLMSGSYHEVGDYSNQSSSWSYRDNEAGDDFDRVVSTSSQPYQALSFDQDSRRYSSSTNHNSIEMELIYDLRSHMEQLYQEMSELRKSIKSCIGMQMQLQQSLNHEVHTVKKEGKKSSHKRDPKKGNCCICYDMKVDSLLYRCGHMCTCLKCANELQWNSGKCPICRAKIVDVVRVYIDV. 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03943 914 MobiDBLite consensus disorder prediction 516 535 - -
Seca6g03943 914 SUPERFAMILY RING/U-box 861 906 - -
Seca6g03943 914 Coils Coil 129 149 - -
Seca6g03943 914 MobiDBLite consensus disorder prediction 454 588 - -
Seca6g03943 914 ProSiteProfiles Zinc finger RING-type profile. 862 901 IPR001841 -
Seca6g03943 914 MobiDBLite consensus disorder prediction 573 588 - -
Seca6g03943 914 MobiDBLite consensus disorder prediction 399 417 - -
Seca6g03943 914 MobiDBLite consensus disorder prediction 396 417 - -
Seca6g03943 914 MobiDBLite consensus disorder prediction 742 758 - -
Seca6g03943 914 MobiDBLite consensus disorder prediction 51 73 - -
Seca6g03943 914 MobiDBLite consensus disorder prediction 87 114 - -
Seca6g03943 914 PANTHER BNAC05G24000D PROTEIN 1 913 - -
Seca6g03943 914 MobiDBLite consensus disorder prediction 454 493 - -
Seca6g03943 914 MobiDBLite consensus disorder prediction 558 572 - -
Seca6g03943 914 MobiDBLite consensus disorder prediction 191 332 - -
Seca6g03943 914 MobiDBLite consensus disorder prediction 99 113 - -
Seca6g03943 914 MobiDBLite consensus disorder prediction 191 227 - -
Seca6g03943 914 CDD mRING-HC-C3HC5_NEU1 859 911 - -
Seca6g03943 914 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 837 913 IPR013083 -
Seca6g03943 914 Pfam Zinc finger, C3HC4 type (RING finger) 859 906 - -
Seca6g03943 914 MobiDBLite consensus disorder prediction 696 759 - -
Seca6g03943 914 Coils Coil 583 603 - -
Seca6g03943 914 MobiDBLite consensus disorder prediction 711 729 - -
Seca6g03943 914 MobiDBLite consensus disorder prediction 255 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03943 Seca-Chr6 107142474 107146977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03943 862 910 C3H Transcription Factor Family AT3G06140 40.816 1.51e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03943 - - gmx:100796627 1013.06