Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03942 ATGAGATTTTTAACACTTGCAATTGTGCTACTCTTGTTCTATTCTTGTGGGATATTAGTCTTCTGCCATGGAAGCTTAGATAGTCATGAGAGCACTTTGGGAGTGCTTTTGGAGGTGAAATCATCGTTCTTGGGAGACCCTCAAAATGTTCTGAGTGATTGGTCAGAGAACAATACTGATTACTGTAGCTGGAAAGGAGTGTCATGTGAGTTGAAGAAGTTAAACTCCAAAAATTTGAATGACTCGGTGCAAGTGGTGGTGGGACTCAACCTGGCCGACTCGTCACTCACTGGGTCAATATCACCCTCACTCGGTCGTTTGCAAAACCTGCTCCATCTTGATCTCTCTTCTAACTACCTCACTGGTCCCATTCCACCTAGCATCTCCAACCTCCAATTCTTGGAATCTCTGCTACTCTTTTCCAACCAACTCACGGGTCACATTCCCACTGAGTTTGGCTCGCTGCTGAGTCTCCGAGTTTTGCGAATCGGTGACAATGGACTCACTGGTGTGATTCCCGCTTCACTTGGGAATCTTGTTAACCTTGTCAACCTTGGTTTAGCTTCATGCAGTCTCACCGGTTCGATTCCACCCCAACTCGGTCAACTCAGTGAGTTGGAGAATCTCAACCTGCAGGATAATGAATTGACGGGTCCGATTCCGTCCGAGGTAGGGAACTGCTCAAGCCTCGTCAACTTCACTGCTGCTGATAACAAACTCAGTGACTCGCTCCCGAGTGAACTGGGTCAACTCAGTAAACTCCAAACTCTCAACCTTGCCAATAACAGTCTAAAAGGGGAGATTCCGAGTCAACTCGGTGAACTGAGTGAGCTTGTTTATCTGAATTTAAGGGCGAACCAGCTTGAGGGTCATATTCCACCGTCTCTAGCTCAACTGGGTAGTCTTCAAACTCTGGACTTGTCGAAGAACATGCTCAGTGGTGGGATTCCAGAGGAGTTGGGGAACATGGGTCAGTTACATTACATGGTTCTCTCTGAGAATCAACTCTATGGGACTATTCCAAGAACCATATGTTCCAATGCAACAAGTTTGGTGCAGTTGTTGATATTAAATAGTGGGCTTCATGGTGAGATTCCAGCTGAGTTGATTCAATGCCAATCATTGAAACAGCTTGATTTCTCCAACAATTATCTTAATGGAACAATACCTCTTGAGGTTTATGGATTGAAGGGGCTAAATGATCTCTCCCTTTACAATAACAGTTTGGTTGGTTCAATCTCTCCCTTCATAGGGAACCTAACTAATTTGCAGACTCTTGGATTGTATCAGAACAAGTTGCAGGGTGCTCTGCCCAGAGAGATTGGGATGCTTGGGAAGCTGGAAAGACTATTTCTTTATGAGAATCAATTATCAGGGAAGATACCTTTGGAGATTGGTAACTGTTCAAGCTTGCAAATGATTGATTTTTTTGGGAATCATTTCAATGGGGAAATTCCCTTTACTATTGGGAGATTGAAAGAGTTGAATTTCCTTCACCTTAGGCAGAATGAGCTTGTGGGTGAGATTCCTGCCACCCTTGGTAACTGTAGAAAACTGGAGGTGCTGGATTTGGCAGACAATCAGCTCTCAGGTGGCATTCCTGTAACATTTGGATTCCTCACATCCTTGCAGCTGTTTATGCTCTACAACAATTCTCTCCAAGGTAGCCTTCCTCACCAACTGATAAATGTAGCAAACTTGACCAGAGTGAATCTTTCAAAGAACAAACTGAATGGTAGTTTGAATGCATTGTGTAGCTCTCGGTTGTTTCTCTCTTTTGATGTCACAGATAATGAATTTGATGGTGAAATCCCCTTTCACCTGGGAAACTCACCCTCCCTTGACAGGTTAAGATTAGGTAACAACAAATTTTCTGGTGAAATCCCAAGGACATTGGGAAAAATCACTAATTTGTCATTGTTAGACCTCTCAGGAAATTCCCTTACAGGACCAATACCATATGAGCTTTCATTGTGTAATAAACTGACCTACATTGCTGTAGACAATAACCTTTTATCTGGACACATGCCACAATGGCTTGGAAGTTTGCCCCAACTGGGAGAGCTTAGGCTTTCATCCAATCAATTTTCTGGGCCTCTTCCACTAGGCCTATTCAAACTACCCAAGTTGCTGATTCTTTCCTTGCATAACAATTCTCTTAATGGAAGTCTCCCAGATGATATTGGTGATCTTGAATCCCTTACTGTCCTTAGACTTGAAAATAATAAGTTCTCTGGACCAATCCCTCATGCAATAGGTAAGTTGAGGAATCTTTATGAGCTCCAGCTATCCAGAAATAGCTTTGATGGTGAGATACCAACTGAGATTGGAAGTCTCCAAAATCTCCAAAGCATTTTAGACCTCAGTTGCAATAATCTTTCTGGTCACATCCCACCTTCACTTGATATGCTGTCAAAATTGGAAACACTTAATCTTTCTCACAATCAACTCACTGGACAAGTTCTTCTATCAGTTGGTGAAATGAGGAGCTTGGGAAATCTTGATATCTCTTACAATAAGCTTCAAGGTGCATTGGATAAGCAATTCTCTCGCTGGCCATATGAGGCATTTGAAGGGAACCTAAATCTTTGTGGAGCCTCTCTTGGGCGGTGCAGTGCTCCCCATAACAAGCTTTCAGGTTTAAGTGAGGCATCAGTGGTTATAATCTCTGCCATTTCAACTTTTGCTGCAATTGCATTACTAATACTTACAGTGAGATTCTTCAAGAAAAACAAAAAAGTTTTTTTCAGGAAAGGAAGTGAATTGAGTTGTGTTTTCTCCTCCTCTTCATCACAAGCAAGGAGACGAGCATTGTTCCCACTAAATGCTGCTGGAAAGAGAGATTTCAAATGGGAAGATATCATGGATGTCACAAACAATTTGAGTGATGAATTCATAATTGGTTGTGGAGGTTCTGGGACAGTCTATAGAGTTGAATTGCCCACTGGAGAGACTGTGGCTGTCAAGAAGATTTTATGGAAAGATGATTATCTGTTAAACAAAAGCTTTATGAGAGAAGTCAAGACTCTGGGGAGGATTAGGCACAGACATCTGGTGAAACTGATAGGCTGTTGTAGCAATAGAAACAAAGGAACTGGTTGGAATCTGTTGATATATGAGTATATGGAGAATGGGAGTGTATGGGATTGGCTACATGGAAAACCTCTCAAGGAAAACAAAGCAGAGGGGAGCCTTGATTGGGACACAAGGTTCAAAATTGCTGTGGGATTAGCTCAAGGAGTGGAGTATCTTCATCATGATTGTGTACCAAAGATCATTCACAGGGACATCAAATCTAGCAACATATTGCTAGATTCCAGAATGGAGGCACATTTGGGAGATTTTGGACTGGCAAAAACACTCAATGAGAATCATGACTCTTACACTGAGTCCAATTCTTGCTTTGCTGGGTCATATGGTTACATAGCCCCAGAATATGCATACTCAATGAAGGCAACAGAGAAAAGTGATGTTTACAGCATGGGAATTGTGCTTATGGAACTTGTTAGTGGTAAAATGCCAACAGATGCAGCTTTTAGAGCAGATATGGACATGGTGAGATGGATGGAGATGAACATTGACATGCAAGGAACTGCACGAGAGGAATTGATAGATCCTGAGCTCAAACCCCTTTTACCTGGTGAAGAGTTTGCTGCATTCCAAGTGCTTGAGATAGCCATACAGTGCACAAAAACTGCACCACAGGAGAGGCCATCATCACGGCAAGTATGTGATCTTCTTCAAGATGTTTCCAACAACAAAAAGGTGAACTTTGAGAAGATGAATTTGGATTATAACAAGTGA 3804 0.423 MRFLTLAIVLLLFYSCGILVFCHGSLDSHESTLGVLLEVKSSFLGDPQNVLSDWSENNTDYCSWKGVSCELKKLNSKNLNDSVQVVVGLNLADSSLTGSISPSLGRLQNLLHLDLSSNYLTGPIPPSISNLQFLESLLLFSNQLTGHIPTEFGSLLSLRVLRIGDNGLTGVIPASLGNLVNLVNLGLASCSLTGSIPPQLGQLSELENLNLQDNELTGPIPSEVGNCSSLVNFTAADNKLSDSLPSELGQLSKLQTLNLANNSLKGEIPSQLGELSELVYLNLRANQLEGHIPPSLAQLGSLQTLDLSKNMLSGGIPEELGNMGQLHYMVLSENQLYGTIPRTICSNATSLVQLLILNSGLHGEIPAELIQCQSLKQLDFSNNYLNGTIPLEVYGLKGLNDLSLYNNSLVGSISPFIGNLTNLQTLGLYQNKLQGALPREIGMLGKLERLFLYENQLSGKIPLEIGNCSSLQMIDFFGNHFNGEIPFTIGRLKELNFLHLRQNELVGEIPATLGNCRKLEVLDLADNQLSGGIPVTFGFLTSLQLFMLYNNSLQGSLPHQLINVANLTRVNLSKNKLNGSLNALCSSRLFLSFDVTDNEFDGEIPFHLGNSPSLDRLRLGNNKFSGEIPRTLGKITNLSLLDLSGNSLTGPIPYELSLCNKLTYIAVDNNLLSGHMPQWLGSLPQLGELRLSSNQFSGPLPLGLFKLPKLLILSLHNNSLNGSLPDDIGDLESLTVLRLENNKFSGPIPHAIGKLRNLYELQLSRNSFDGEIPTEIGSLQNLQSILDLSCNNLSGHIPPSLDMLSKLETLNLSHNQLTGQVLLSVGEMRSLGNLDISYNKLQGALDKQFSRWPYEAFEGNLNLCGASLGRCSAPHNKLSGLSEASVVIISAISTFAAIALLILTVRFFKKNKKVFFRKGSELSCVFSSSSSQARRRALFPLNAAGKRDFKWEDIMDVTNNLSDEFIIGCGGSGTVYRVELPTGETVAVKKILWKDDYLLNKSFMREVKTLGRIRHRHLVKLIGCCSNRNKGTGWNLLIYEYMENGSVWDWLHGKPLKENKAEGSLDWDTRFKIAVGLAQGVEYLHHDCVPKIIHRDIKSSNILLDSRMEAHLGDFGLAKTLNENHDSYTESNSCFAGSYGYIAPEYAYSMKATEKSDVYSMGIVLMELVSGKMPTDAAFRADMDMVRWMEMNIDMQGTAREELIDPELKPLLPGEEFAAFQVLEIAIQCTKTAPQERPSSRQVCDLLQDVSNNKKVNFEKMNLDYNK. 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03942 1267 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 543 1248 - -
Seca6g03942 1267 SUPERFAMILY L domain-like 592 865 - -
Seca6g03942 1267 FunFam Leucine-rich repeat receptor-like protein kinase 1042 1264 - -
Seca6g03942 1267 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 295 391 - -
Seca6g03942 1267 Pfam Leucine rich repeat N-terminal domain 35 69 IPR013210 -
Seca6g03942 1267 Gene3D Ribonuclease Inhibitor 395 537 IPR032675 -
Seca6g03942 1267 Gene3D Ribonuclease Inhibitor 538 875 IPR032675 -
Seca6g03942 1267 Gene3D Ribonuclease Inhibitor 235 394 IPR032675 -
Seca6g03942 1267 SMART LRR_typ_2 828 859 IPR003591 -
Seca6g03942 1267 SMART LRR_typ_2 107 131 IPR003591 -
Seca6g03942 1267 SMART LRR_typ_2 635 659 IPR003591 -
Seca6g03942 1267 SMART LRR_typ_2 155 178 IPR003591 -
Seca6g03942 1267 SMART LRR_typ_2 492 516 IPR003591 -
Seca6g03942 1267 SMART LRR_typ_2 444 468 IPR003591 -
Seca6g03942 1267 SMART LRR_typ_2 804 824 IPR003591 -
Seca6g03942 1267 SMART LRR_typ_2 203 227 IPR003591 -
Seca6g03942 1267 SMART LRR_typ_2 420 443 IPR003591 -
Seca6g03942 1267 SMART LRR_typ_2 251 275 IPR003591 -
Seca6g03942 1267 SMART LRR_typ_2 540 564 IPR003591 -
Seca6g03942 1267 SMART LRR_typ_2 755 779 IPR003591 -
Seca6g03942 1267 SMART LRR_typ_2 707 731 IPR003591 -
Seca6g03942 1267 SMART LRR_typ_2 299 323 IPR003591 -
Seca6g03942 1267 SUPERFAMILY Protein kinase-like (PK-like) 945 1247 IPR011009 -
Seca6g03942 1267 Pfam Leucine rich repeat 756 817 IPR001611 GO:0005515
Seca6g03942 1267 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Seca6g03942 1267 SMART serkin_6 961 1247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03942 1267 Gene3D Ribonuclease Inhibitor 32 154 IPR032675 -
Seca6g03942 1267 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 922 1041 - -
Seca6g03942 1267 ProSitePatterns Protein kinases ATP-binding region signature. 967 990 IPR017441 GO:0005524
Seca6g03942 1267 Gene3D Ribonuclease Inhibitor 155 234 IPR032675 -
Seca6g03942 1267 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 583 875 - -
Seca6g03942 1267 ProSiteProfiles Protein kinase domain profile. 961 1247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03942 1267 Pfam Leucine Rich Repeat 109 131 IPR001611 GO:0005515
Seca6g03942 1267 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1092 1104 IPR008271 GO:0004672|GO:0006468
Seca6g03942 1267 Pfam Protein kinase domain 966 1244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03942 1267 PRINTS Leucine-rich repeat signature 804 817 - -
Seca6g03942 1267 PRINTS Leucine-rich repeat signature 638 651 - -
Seca6g03942 1267 SUPERFAMILY L domain-like 35 341 - -
Seca6g03942 1267 Gene3D Transferase(Phosphotransferase) domain 1 1042 1266 - -
Seca6g03942 1267 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 29 198 - -
Seca6g03942 1267 FunFam Uncharacterized protein 392 485 - -
Seca6g03942 1267 SUPERFAMILY L domain-like 345 649 - -
Seca6g03942 1267 Gene3D Phosphorylase Kinase; domain 1 923 1041 - -
Seca6g03942 1267 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 486 582 - -
Seca6g03942 1267 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 199 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03942 Seca-Chr6 107135272 107139218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03942 170 752 Receptor kinase-like Gene Family AT5G56040 35.574 5.69e-87 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca6g03942 Pkinase 9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03942 - - gmx:100797153 1825.06