Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03930 ATGGATGCTTCAAGTGGAAGTACTAGTGATAAGCGAGATAGGAATCAAAGTTCCAGTGAGGGAAACCCATCCTTCCATTTCACTCCTTATCACTTAGCTCAACTTGAAGCATATTTGAAGCTATGCCCACATCCAGATGAAACCCAACTTCATATATTAGCAAGAGACCTAGGGCTTGAGCCAGAACAGATTTATCATTGGTTTCAGACCAAAATCCAGGGAGATCATGAGGGGTCTGAATCTGAGCTAGAGTCTCCAAGCACAGAAATTTCTAGGAAGAAGGAAAGAAGACAAATGTCAGAGATTGCAGATGCTGCTATAAGCGAACTCCTTAAACTCATGACTACCGATAAGCCCCTTTGGACCAAATCCTATGATATTGTTGGCTTTGTTCTCGTTCCTGAAAGCTATGCCAACTTGTTTCTTGAGGCTATTAACTTGGCAAGTCCAAACATTCATCAAGAATCTTCCAAAGATTCAATAGTAGTAAAGCTTGGTGCGATGCAATTGATTGAAATGTTTTTAGATTCGGATAATTGGGCTAATCTTTTCCCAACCATTGTTTCAAAAGCAAAAACATTGAGAGTCTTTGATATCGGTTCACTAGAAAATAAAAGTGGAGCCTTGCAATTGATGTATGGAGAAACTCACGTTCTTTCACCTTTAGTGCCATCTCGGGAATTTGTCTTCCTTCGCTCTTGTGAACAAGTTGGGGATGGTTTATGGTTGATAACTGATGTGTCTGTTGATAATGCGTCTCTTGATAACAACTATGAAGGCCAAATCCCTGATTCTCCTCTTCGAAAGTGGCTGTTTGGTCTTTACAAAATGTGTGAGAAAATTGCTTGCACTTCAATTCAGTATCTGCCAGCTCATAGAGAGATCTCTTCACCCAAAGGAAGAGAGGTCGTAATAAACCTCTCTAACCGAATGGTTCAGAACTTCTGCAAAGTATTGAACCTAAGAGATCATCCGCATTTCACGAGCTTTCATGTGGGCAATAGAAATGAACTTTTTGTGAGTTTTCATAAGAACATACCATCACTCCAACCAGAAGGCTTCATAGGCACAACTATGCTTTCAATTTCGCTTCCTCTGCTTCCACAGAATGTATTTTACTATCTCAAGCATCTGTATCCACGACCTCGGTGGGATGTTCTTTCCGTTGGGAATCCACTGGAGGAGATCGCTCATATACCAATCAGCGATACCAGTCGTATTTCAGTTATTAAGACCTTCAACCGTGATGACAACAATTTGCTGGTATTTCAAGAGAGTAGTATAGATCATTTGGGAGTGTATGTTGTGTTTGCTCCACTGGATGAAGCAATTGGGGAAATTGTGATGAATGGAGAGTCTACGAATGTGGCAGTGCTTCCGTCAGGGTTTATGATCAGTGGGGACAATCGTGCAGTTGCTGAGAGTAGAAATCCTCATAGATCAGGAGGAACGTTGTTGACTACCTGTTACCAAGTACTGGTTTGTGATGACTCACTGACCCTGGAAATGAAAGTTGAAGCTATGAAGTCTCTCATTGGACTCATCATCTCAACAATCCAAAAGGTTACCCTTGTCCTCGAGTGTCCCAATTGTTGGTTACGAGTGCACTTTTGCTAA 1617 0.4137 MDASSGSTSDKRDRNQSSSEGNPSFHFTPYHLAQLEAYLKLCPHPDETQLHILARDLGLEPEQIYHWFQTKIQGDHEGSESELESPSTEISRKKERRQMSEIADAAISELLKLMTTDKPLWTKSYDIVGFVLVPESYANLFLEAINLASPNIHQESSKDSIVVKLGAMQLIEMFLDSDNWANLFPTIVSKAKTLRVFDIGSLENKSGALQLMYGETHVLSPLVPSREFVFLRSCEQVGDGLWLITDVSVDNASLDNNYEGQIPDSPLRKWLFGLYKMCEKIACTSIQYLPAHREISSPKGREVVINLSNRMVQNFCKVLNLRDHPHFTSFHVGNRNELFVSFHKNIPSLQPEGFIGTTMLSISLPLLPQNVFYYLKHLYPRPRWDVLSVGNPLEEIAHIPISDTSRISVIKTFNRDDNNLLVFQESSIDHLGVYVVFAPLDEAIGEIVMNGESTNVAVLPSGFMISGDNRAVAESRNPHRSGGTLLTTCYQVLVCDDSLTLEMKVEAMKSLIGLIISTIQKVTLVLECPNCWLRVHFC. 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03930 538 SMART START_1 101 318 IPR002913 GO:0008289
Seca6g03930 538 MobiDBLite consensus disorder prediction 1 17 - -
Seca6g03930 538 MobiDBLite consensus disorder prediction 75 95 - -
Seca6g03930 538 SUPERFAMILY Homeodomain-like 22 70 IPR009057 -
Seca6g03930 538 Gene3D - 1 73 - -
Seca6g03930 538 Gene3D - 100 269 IPR023393 -
Seca6g03930 538 ProSiteProfiles START domain profile. 92 250 IPR002913 GO:0008289
Seca6g03930 538 SUPERFAMILY Bet v1-like 94 253 - -
Seca6g03930 538 Pfam Homeodomain 27 69 IPR001356 GO:0003677
Seca6g03930 538 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 27 80 IPR042160 -
Seca6g03930 538 ProSiteProfiles 'Homeobox' domain profile. 18 71 IPR001356 GO:0003677
Seca6g03930 538 SMART HOX_1 20 82 IPR001356 GO:0003677
Seca6g03930 538 MobiDBLite consensus disorder prediction 1 25 - -
Seca6g03930 538 CDD homeodomain 27 69 IPR001356 GO:0003677
Seca6g03930 538 Pfam START domain 101 253 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03930 Seca-Chr6 106986807 106989474 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03930 2 71 Homeobox Transcription Factor Family AT3G61150 38.028 1.03e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca6g03930 START 1e-16 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03930 K09338 - aprc:113852280 405.986