Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03929 ATGGACGCTTCAAGTGGAAGTTCTGGTGATTCTGGTGATAAGCGAGACAGGAATCAAAGTTCCAGTGAGGGAAACCCATCCTTCCATTTCACTCCTCATCACTTAGCTCAACTTGAAGCATATTTGAAGCTATGCCCACATCCAGATGAAACCCAACTTCATATATTAGCAAGAGACCTAGGGCTTGAGCCAGAACAGATTTATCATTGGTTTCAGACCAAAATCCAGGGAGATCATGAGGGGTCTGAATCTGAGCTAGAGTCTCCAGGCACAGAAGTTGCTAGGAAGAAGGAAAGAAGACAAATGTCAGAGATTGCAGATGCTGCTATAAACGAACTCCTTAAACTCATGACTACCGATAAGCCCCTTTGGACCAAATCCTATGATATTGTTGGCTTTGTTCTCGTTCCTGAAAGCTATGCCAACTTGTTTCCTGAGGCTATTAACTTGGCAAGTCCAAACATTCATCAAGAATCTTCCAAAGATTCAATAGTAGTAAAGCTTGGTGCGATGCAATTGATTGAAATGTTTTTAGATTCGGATAATTGGGCTAATCTTTTCCCAACCATTGTTTCAAAAGCAAAAACATTGAGAGTCTTTGATATCGGTTCACTAGAAAATAAAAGTGGAGCCTTGCAATTGATGTATGGAGAAACTCACGTTCTTTCACCTTTAGTGCCATCTCGGGAATTCGTCTTCCTTCGCTCTTGTGAACAAGTTGGGGATGGTTTATGGTTGATAACTGATGTGTCTGTTGATAATGCGTCTCTTGATAACAACTATGAAGGCCAAATCCCTTATTCTCCTCTTCGAAAGTTCCCCTCAGGCTGCATGATTAAGCAATTGCCTAATGGATTTTCCAAGGTTACTTGGATTGAACATGTGGAAGTGCAAGAAAAGAGCAAAATAGACAATCGCTACAAAGAGCTTATTTCTAACAATTTCGCTTTTGGAGCAAACAGGTGGCTGTTTGGTCTTTACAAAATGTGTGAGAAAATTGCTTGTACTTCAATTCAGTATCTGCCAGCTCATAGAGAGATCTCTTCACCCAAAGGAAGAGAGGTCGTAATAAACCTCTCTAACCGAATGGTTCAGAACTTCTGCAAAGTATTGAACCTAAGAGATCATCCACATTTCACGAGCTTTCATGTGGGCAATAGAAATGAACTTTTTGTGAGTTTTCATAAGAACATACCATCACTCCAACCAGAAGGCTTCATAGGCACAGCTATGCTTTCAATTTCGCTTCCTCTGCTTCCACAGAATGTATTTTACTATCTCAAGCATCTGTATCCACGACCTCGGTGGGATGTTCTTTCCGTTGGGAATCCACTGGAGGAGATCGCTCATATACCAATCAGCGATACCAGTCGTATTTCAGTTATTAAGACTTTCAACCGTGATGACAACAATTTGCTGATATTTCAAGAGAGTAGTATAGATCATTTGGGAGCGTATGTTGTGTTTGCTCCACTGGATGAAGCAATTGGGGAAATTGTGATGAATGGAGAGTCTACGAATGTGGCAGTGCTTCCGTCAGGGTTTATGATCAGTGGGGACAATCGTGCAGTTGTTGAGAGTAGAAATCCTCATAGATCAGGAGGAACGTTGTTGACTACCTGTTACCAAGTACTGATTTGTGATGACTCACTGACCCTGGAAATGAAAGTTGAAGCTATGAAGTCTCTCATTGGACTCATCATCTCAACAATCCAAAAGGTTACCCTTGTCCTCGAGTGTCCCAATTGTTGGTTATGA 1758 0.4135 MDASSGSSGDSGDKRDRNQSSSEGNPSFHFTPHHLAQLEAYLKLCPHPDETQLHILARDLGLEPEQIYHWFQTKIQGDHEGSESELESPGTEVARKKERRQMSEIADAAINELLKLMTTDKPLWTKSYDIVGFVLVPESYANLFPEAINLASPNIHQESSKDSIVVKLGAMQLIEMFLDSDNWANLFPTIVSKAKTLRVFDIGSLENKSGALQLMYGETHVLSPLVPSREFVFLRSCEQVGDGLWLITDVSVDNASLDNNYEGQIPYSPLRKFPSGCMIKQLPNGFSKVTWIEHVEVQEKSKIDNRYKELISNNFAFGANRWLFGLYKMCEKIACTSIQYLPAHREISSPKGREVVINLSNRMVQNFCKVLNLRDHPHFTSFHVGNRNELFVSFHKNIPSLQPEGFIGTAMLSISLPLLPQNVFYYLKHLYPRPRWDVLSVGNPLEEIAHIPISDTSRISVIKTFNRDDNNLLIFQESSIDHLGAYVVFAPLDEAIGEIVMNGESTNVAVLPSGFMISGDNRAVVESRNPHRSGGTLLTTCYQVLICDDSLTLEMKVEAMKSLIGLIISTIQKVTLVLECPNCWL. 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03929 585 ProSiteProfiles START domain profile. 95 335 IPR002913 GO:0008289
Seca6g03929 585 Gene3D - 102 310 IPR023393 -
Seca6g03929 585 Gene3D - 2 76 - -
Seca6g03929 585 ProSiteProfiles 'Homeobox' domain profile. 21 74 IPR001356 GO:0003677
Seca6g03929 585 Pfam Homeodomain 30 72 IPR001356 GO:0003677
Seca6g03929 585 CDD homeodomain 30 72 IPR001356 GO:0003677
Seca6g03929 585 SUPERFAMILY Homeodomain-like 25 73 IPR009057 -
Seca6g03929 585 MobiDBLite consensus disorder prediction 78 99 - -
Seca6g03929 585 SMART START_1 104 332 IPR002913 GO:0008289
Seca6g03929 585 SUPERFAMILY Bet v1-like 98 333 - -
Seca6g03929 585 Pfam START domain 104 332 IPR002913 GO:0008289
Seca6g03929 585 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 89 575 IPR042160 -
Seca6g03929 585 SMART HOX_1 23 85 IPR001356 GO:0003677
Seca6g03929 585 CDD START_ArGLABRA2_like 99 331 - -
Seca6g03929 585 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03929 Seca-Chr6 106974542 106977194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03929 31 84 Homeobox Transcription Factor Family AT1G73360 43.860 8.07e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca6g03929 START 7.9e-31 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03929 K09338 - aprc:113852280 492.656