Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03924 ATGGATGACACTGAACCACAGAAAAGCTATTGGAGATGGAGCAAACAAGATTTCTTGCCAGAGGAGTCCTTTCAAAGCTGGAACAACTATGTATCTGCTCTTTCACAAACATGGTTTAGGTTCAAGGATCGTTTCATGAGCAGATCAGATGATGCTACTGAGACAGACGAGCTCAGAAAACAAAGTGAGAATGACATGAAACGATGCCTCAACTGGTGGGACCTCATCTGGTTTGGGTTTGGTGCTGTGATTGGAGCAGGAATCTTTGTACTCACTGGTCAAGAAGCTCATAACCATGCTGGAGCAGCTATTGTTCTATCCTATGTTGCTTCAGGAATTTCAGCAATGCTTTCTGTTTTCTGCTACACTGAATTTGCTGTAGAAGTTCCAGTTGCTGGTGGTTCATTTGCTTATCTGAGAATTGAATTAGGAGACTTTGCTGCTTTCATAGCAGCTGGGAACATACTTCTTGATAGCATTCTTGGAAGTGCAGCAGTTGCCAGATCATGGACTTCTTACTTCACAAGCCTTTTGAATCGTCCAAAGAATTCACTGAGAATCAAGACAGATCTCAAAGATGGATACAGCTTGCTGGACCCTATAGCTGTTGGGGTTTTGGCAATTGCAGCAACAGTTGCAATGATCAGCACAAGAAAAACTTCATACCTCAATTGGATAGCATCTGCAATCAACACAGCTGTAATCATATTTGTGATTATTGCAGGGTTTGCACATGCCAACCCATCAAATATGACACCTTTTTTACCTCATGGACCTGAGGGGGTATTTCAAGCTGCTGCAATTCTTTATTTTGCATATGGTGGGTTTGACAGTATTGCAACCATGGCTGAAGAAACCAAAAATCCATCAAGGGATATACCAATAGGCTTGGTTGGGTCAATGTCCTTGATCACAGTGATGTATTGCTTAATGGCACTCTCCCTAAGCATGATGCAGAAATACACAGACATAGATACAGATGCACCTTTCTCAGTTGCATTTCAGAAAGTAGGAATGAAGTGGGCAAAGTATGTGGTAGCTTTTGGTGCACTGAAGGGAATGACTACAGTGCTTCTAGTAGGGATGTTGGGACAGGCACGTTATATTACTCATATTGCACGTTCCCACATGATCCCTCCATGGTTTGCTCTTGTACACCCCAAGACAGGAACCCCTATAAATGCTACACTCTTGATTACCATTGCAAGTGCTTGCATAGCTTTTTTCACAGGCTTGGATGTGTTATCAAGCTTGATATCAGTAAGCACACTCTTTGTCTTCATGATGATATCTGTTGCCCTTTTGGTCAGGAGGTACTATGTCAGAGGAGTCACATCAACAGAGAATTTTTTAAAACTAGTTATCTTCTTGCTGCTCATTATTGCTTCCTCAATGGGAATTTCAGCTTATTGGGGGCTGAGGCCTAATGGTTGGCTTGGATATACTATAACTGTTCCTGTTTGGTTCTTGGCAACTTTGGGGATGTCACTGTTTTTGACTCAGCAAAGGAAGCCAAAAGTTTGGGGAGTTCCACTTGTCCCATGGTTGCCATCTTTGTCAATTGCAACAAATATCTTTCTAATGGGATCTTTGGACTCTGATGCCTTCATAAGATTTGGAGTGTGCACAGTGGTAATGCTTATCTACTATTTCTTCTTTGGCCTCCATTCAACTTACGATATGGCTCATCAACAACAAAAGCTACAATCCACTTCAACAAAGAAACAAACAATTTCTACTATGGCTTCCACACAAGGCATGGATGACCCTCAACCACAAAAAACCTATTGGAGATGGAGCAAACAAGATTTCTTGCCAGAAGAGTCCTTTCAAAGCTGGAACAATTATGCTTCAGCTCTTTCACAGACATGGTTCAGATTCAAGGATCGTCTCATGAGCAGATCAGATGATGCTACTGAGACAGAAGAACTCAGAAAACAAAGTGAGAATGACATGAAACGATGCCTCAACTGGTGGGACCTCATCTGGTTTGGGTTTGGTGCTTTGATTGGAGCAGGAATCTTTGTGCTCACTGGTCAAGAAGCTCATAACCATGCTGGAGCAGCTATTGTCTTATCTTATGTTGCTTCAGGCTTTTCAGCAATGCTTTCTGTTTTTTGCTACACTGAATTTGCTGTAGAAGTTCCAGCTGCAGGTGGTTCATTTGCTTATCTCAGAATTGAATTAGGAGACTTTGTTGCTTTTATAGCAGCTGGTAACATACTTCTTGAAAGCATTATTGGAAGTGCAGCAGTAGCCAGATCATGGACTTCTTACTTCACAAGCCTTTTGAATCGTCCAAAGAATTCATTGAGGATCAAGACAGATCTCAAAGATGGATACAACTTACTAGACCCTATTGCTGTTGGGGTTTTGGCAATTGCTGGAACAGTGGCAATGATCAGCACAAGAAAAACTTCATACCTCAATTGGATAGCATCTGCAATCAACACAGCTGTTATCATATTTGTGATTATTGCAGGGTTTGCACATGCCAATACATCAAATTTAACACCTTTTTTACCTCATGGTGCTGAGGGGGTCTTTCAAGCTGCTGCAATACTTTTTTTTGCATATGGTGGGTTTGACAGCATTGCCACCATGGCTGAAGAAACCAAAAATCCATCAAGGGACATACCAATTGGCTTGGTTGGGTCAATGTCCATCATCATAGTAATGTATTGCTTAATGGCACTCTCCCTGAGCATGCTGCAGAAATACACTGATATAGATACAGAAGCAGCTTTCTCAGTTGCATTTCAGAAAGTAGGAATGAATTGGGCAAAATATGTGGTAGCTTTTGGTGCACTAAAGGGGATGACTACAGTGCTTCTGGTAGGTAGATTGGGACAGGCACGTTATATTACTCACATTGCACGTTCCCACATGATTCCCCCATGGTTAGCTCTTGTACACCCCAAGACAGGAACCCCTATAAATGCTACACTCTTGATTACCATTGCAAGTGTCTGCATAGCTTTTTTCACAAGCTTGGATGTGTTATCAAGCTTGTTATCAGTAAGCACACTCTTTGTCTTCATGATGATATCTGTTGCCCTTCTGATCAGGAGATACCATGCCAGAGGAGTCACACCAAGAGAGAACTTGTTAAAGCTAGTTATCTTCTTGATGCTCATTATTGCTTCCTCAATTGGAATGTCAGCTTATTGGGGGCTAAGGCCTAATGGTTGGCTTGGATACATCATAACTGTTCCTGTTTGGTTCTTGGGGACTCTTGGATTGTCACTGTTTTTGACTCAGCAAAGGAAGCCAAGAGTTTGGGGAGTTCCACTTGTCCCATGGTTGCCATCTTTGTCAATTGCAACAAATATCTTTCTAATGGGATCTTTGGACTCTGATGCCTTCATAAGATTTGGAGTGTGCACAGTGGTAATGCTAATCTACTATTTTTTCTTTGGCCTTCATTCAACTTACGATATGGCTCATCAACAAAAAAAGCTACAATCCATCAAAGTTAAGCACACAGAAAACATTGAGAATGCAGGGCCTTAG 3513 0.417 MDDTEPQKSYWRWSKQDFLPEESFQSWNNYVSALSQTWFRFKDRFMSRSDDATETDELRKQSENDMKRCLNWWDLIWFGFGAVIGAGIFVLTGQEAHNHAGAAIVLSYVASGISAMLSVFCYTEFAVEVPVAGGSFAYLRIELGDFAAFIAAGNILLDSILGSAAVARSWTSYFTSLLNRPKNSLRIKTDLKDGYSLLDPIAVGVLAIAATVAMISTRKTSYLNWIASAINTAVIIFVIIAGFAHANPSNMTPFLPHGPEGVFQAAAILYFAYGGFDSIATMAEETKNPSRDIPIGLVGSMSLITVMYCLMALSLSMMQKYTDIDTDAPFSVAFQKVGMKWAKYVVAFGALKGMTTVLLVGMLGQARYITHIARSHMIPPWFALVHPKTGTPINATLLITIASACIAFFTGLDVLSSLISVSTLFVFMMISVALLVRRYYVRGVTSTENFLKLVIFLLLIIASSMGISAYWGLRPNGWLGYTITVPVWFLATLGMSLFLTQQRKPKVWGVPLVPWLPSLSIATNIFLMGSLDSDAFIRFGVCTVVMLIYYFFFGLHSTYDMAHQQQKLQSTSTKKQTISTMASTQGMDDPQPQKTYWRWSKQDFLPEESFQSWNNYASALSQTWFRFKDRLMSRSDDATETEELRKQSENDMKRCLNWWDLIWFGFGALIGAGIFVLTGQEAHNHAGAAIVLSYVASGFSAMLSVFCYTEFAVEVPAAGGSFAYLRIELGDFVAFIAAGNILLESIIGSAAVARSWTSYFTSLLNRPKNSLRIKTDLKDGYNLLDPIAVGVLAIAGTVAMISTRKTSYLNWIASAINTAVIIFVIIAGFAHANTSNLTPFLPHGAEGVFQAAAILFFAYGGFDSIATMAEETKNPSRDIPIGLVGSMSIIIVMYCLMALSLSMLQKYTDIDTEAAFSVAFQKVGMNWAKYVVAFGALKGMTTVLLVGRLGQARYITHIARSHMIPPWLALVHPKTGTPINATLLITIASVCIAFFTSLDVLSSLLSVSTLFVFMMISVALLIRRYHARGVTPRENLLKLVIFLMLIIASSIGMSAYWGLRPNGWLGYIITVPVWFLGTLGLSLFLTQQRKPRVWGVPLVPWLPSLSIATNIFLMGSLDSDAFIRFGVCTVVMLIYYFFFGLHSTYDMAHQQKKLQSIKVKHTENIENAGP. 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03924 1170 Gene3D Amino acid/polyamine transporter I 64 493 - -
Seca6g03924 1170 Gene3D Amino acid/polyamine transporter I 650 1078 - -
Seca6g03924 1170 FunFam Cationic amino acid transporter 5 650 1084 - -
Seca6g03924 1170 FunFam Cationic amino acid transporter 5 64 498 - -
Seca6g03924 1170 Pfam C-terminus of AA_permease 508 557 IPR029485 -
Seca6g03924 1170 Pfam C-terminus of AA_permease 1094 1143 IPR029485 -
Seca6g03924 1170 PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED 59 558 - -
Seca6g03924 1170 Pfam Amino acid permease 656 1047 IPR002293 GO:0016020|GO:0022857|GO:0055085
Seca6g03924 1170 Pfam Amino acid permease 70 446 IPR002293 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03924 Seca-Chr6 106924732 106933148 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03924 7 565 Organic Solute Cotransporters AT2G34960 76.071 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03924 - - gmx:100797541 968.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03924 6 106924732 106933148 Seca6g03924 6 106924732 106933148 ECH