Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03918 ATGCCGCCACGTGGGGTGAAACTCAGTATTCAAGATAATCATGTGATGATGGACAATGGCATACTAAAAGTCACCTTATCAAATCCAGATGGGATTGTCACTGGAATACAGTATAAAGGCATTGATAACTTGCTTGAAGTTTTGAACCAAGAATCAAACAGAGGGTACTGGGACCTTGTTTGGGGCTCACCAGGAACCAAGAGTACATTTGATGTGTATGTCTATTTTCTTTTCTTTCTATTTTTGTTGATAAAGGGAACCACTTTAAAAGTTATATTGGAAAGTGAGGACCAAGTTGAGTTATCCTTCACCAGGATGTGGGATGCCTCCCTTGAGGGAAATATGGTTCCTTTAAATATTGATAAAAGGTTCATAATGCTTCGTGGTTCTTCTGGCTTCTACTCCTATGCAATTTATGAGCACTTGGAGAACTGGCCTGCTTTCAATCTTGACGAAACAAGAATTGCTTTCAAGCTTAGAAAAGACAAGTTCCATTACATGGCGATGGCAGATAATAGACAAAGAAACCTGCCTCTTCCAGATGATCGATCACCACCAAGAGGCCAAGCCCTTGCCTACCCAGAGGCAGTTCTACTTGTCGATCCTATTGAGCCAGAACTTAAAGGAGAGGTGGATGACAAGTACCAATATTCATGTGACAACAAAGATAACAAAGTTCACGGATGGATTTGCAAGGATCCGGCTGTGGGATTCTGGCAAATTACGCCTACCAATGAGTTTCGATCTGGTGGACCCCACAAACAAAACTTAACTTCCCACGTCGGACCTACCACCCTTGCTATGTTTCTGAGTGCTCATTATAGCGGAGAAGATTTGATACCTAAGTTCAACGCTGGTGAGGCATGGAAGAAAGTTTTTGGTCCAGTTTTCATCTATTTGAATTCTCTTGATAAAGGACGTGACCCTCTTAAGCTATGGGATGATGCTAAACGACAGATGTTGGTGGAAGTTCAAAGCTGGCCCTACAATTTTCCCAAATCAAAGGATTTCCCAAAGAGGAAGGAGCGTGGAAATGTTAGTGGCAGGCTATTGGTTAGAGAGAGGTATATACACGATGACAGTGTACCAGCAAAAGGTGCCTATGTTGGCTTGGCTCCACCAGGAGATGTGGGATCTTGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCTAAAGCAGACGACAATGGCTATTTCTCCATCAGCAATATACATGCTGGCGACTATAATCTTTATGCATGGGTACCTGGTTTTATTGGTGACTATAAATATGATGTAGATATGAATATAACAAAAGGTAGTGACATAAACATTGGTGATCTTGTGTATGAACCTCCAAGAGATGGTCCAACATTATGGGAAATAGGCATCCCTGATCGCTCAGCTGCTGAGTTTTATGTTCCTGATCCAAATCCCCAATATATCAACAAACTCTATGTTAATCATCCTGACAAGTTTAGGCAATATGGGTTATGGGAGAGATATGCAGAATTATACCCTGACAAAGACTTGATCTACACCATTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGATAATACATATCAAGGAACCACGTGGCAAATCAAGTTTAAGCTTGACAATGTGAACAAAAGCAGTAGCTATAAACTGCGAGTGGCTCTTGCATCAGCAACATTATCTGAACTTCAGGTTCGAGTAAATGATCCAAAGGCTAGTCGTCCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCAATTGCTAGGCATGGAATTCATGGGCTTTATTGGCTTTACAATGTGGACATACCAAGTGCTCAACTTGTTAAAGGAGATAACACCATCTTTTTGACACAGACAAGAGGCAATGGCCCATTTCAAGCCCTTATGTATGACTATATTCGTTTGGAAGGTCCAGCACTTGTCTAG 1938 0.4138 MPPRGVKLSIQDNHVMMDNGILKVTLSNPDGIVTGIQYKGIDNLLEVLNQESNRGYWDLVWGSPGTKSTFDVYVYFLFFLFLLIKGTTLKVILESEDQVELSFTRMWDASLEGNMVPLNIDKRFIMLRGSSGFYSYAIYEHLENWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNLPLPDDRSPPRGQALAYPEAVLLVDPIEPELKGEVDDKYQYSCDNKDNKVHGWICKDPAVGFWQITPTNEFRSGGPHKQNLTSHVGPTTLAMFLSAHYSGEDLIPKFNAGEAWKKVFGPVFIYLNSLDKGRDPLKLWDDAKRQMLVEVQSWPYNFPKSKDFPKRKERGNVSGRLLVRERYIHDDSVPAKGAYVGLAPPGDVGSWQRECKNYQFWAKADDNGYFSISNIHAGDYNLYAWVPGFIGDYKYDVDMNITKGSDINIGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPQYINKLYVNHPDKFRQYGLWERYAELYPDKDLIYTIGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFKLDNVNKSSSYKLRVALASATLSELQVRVNDPKASRPLFSSGLIGRDNSIARHGIHGLYWLYNVDIPSAQLVKGDNTIFLTQTRGNGPFQALMYDYIRLEGPALV. 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03918 645 FunFam Rhamnogalacturonate lyase B 339 438 - -
Seca6g03918 645 Gene3D - 449 640 - -
Seca6g03918 645 CDD RGL4_C 453 640 - -
Seca6g03918 645 Pfam Polysaccharide lyase family 4, domain II 365 437 IPR029413 -
Seca6g03918 645 Gene3D - 6 305 IPR014718 GO:0030246
Seca6g03918 645 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 643 - -
Seca6g03918 645 CDD RGL4_M 342 441 IPR029413 -
Seca6g03918 645 SUPERFAMILY Starch-binding domain-like 344 438 IPR013784 GO:0030246
Seca6g03918 645 CDD RGL4_N 6 305 - -
Seca6g03918 645 Pfam Polysaccharide lyase family 4, domain III 451 639 IPR029411 -
Seca6g03918 645 Gene3D - 339 438 - -
Seca6g03918 645 Pfam Rhamnogalacturonate lyase family 10 211 IPR010325 -
Seca6g03918 645 SUPERFAMILY Galactose mutarotase-like 9 302 IPR011013 GO:0003824|GO:0005975|GO:0030246
Seca6g03918 645 SUPERFAMILY Galactose-binding domain-like 448 640 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03918 Seca-Chr6 106853042 106857709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03918 6 643 Polysaccharide Lyase AT1G09890 69.315 0.0 933
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03918 K18195 - gmx:100793563 1159.82