Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03917 ATGTTATGTACCAAATTTCATCACAACATCTCCAACCCCATGGCTGAAATTCACATTCCCACAGGCGCACCCACAATTAGCCCCACCATAAGCAAACCATGTAGTCCTCCACAACATGGTGGTACTAGTCTCAATTTAATGGTTCTTTTGGCAGCCATAGTGTGTGCCTTCCTCTGTGCTCTTGGCCTCAACACTACCTTAAAATGTGTCTTCCAATGTGCTAACCGTGTCCTTACGGAGCCTCTTCAATGGATTGCTTCTCGCAGGCTCAATTCAGGGCTCAAGAAGAAAGAAATGGTAGCTTTACCAACCTCAATTTATGCCCCTTCTTCTGGGTCTCCTCCATCTTCTTCAGATTCTTCTAATTGTGCCATTTGCTTAGCAGAGTTCTGTGATGGGGACAAGATAAGGTTCCTACCAAAGTGCAATCACTGTTTCCATGTGGTTTGCATTGATGAGTGGCTGCTCTCTCATTCTTCTTGTCCTACTTGTAGGAACATGATCAAGTCCAATGATTCAGTACACTGCTTACGGATTGTTATATCATAG 549 0.4408 MLCTKFHHNISNPMAEIHIPTGAPTISPTISKPCSPPQHGGTSLNLMVLLAAIVCAFLCALGLNTTLKCVFQCANRVLTEPLQWIASRRLNSGLKKKEMVALPTSIYAPSSGSPPSSSDSSNCAICLAEFCDGDKIRFLPKCNHCFHVVCIDEWLLSHSSCPTCRNMIKSNDSVHCLRIVIS. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03917 182 Pfam Ring finger domain 122 165 IPR001841 -
Seca6g03917 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 171 IPR013083 -
Seca6g03917 182 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Seca6g03917 182 SUPERFAMILY RING/U-box 116 171 - -
Seca6g03917 182 CDD RING-H2_EL5-like 123 165 - -
Seca6g03917 182 SMART ring_2 123 164 IPR001841 -
Seca6g03917 182 PANTHER RING-H2 FINGER PROTEIN ATL78 30 170 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03917 Seca-Chr6 106847376 106847924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03917 22 166 C3H Transcription Factor Family AT3G10910 40.625 5.96e-33 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03917 - - psat:127138077 257.299