Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03904 ATGGTCTTCTCAACTGCCTTTCTCCATGATGATGGCCCCTTTATTTCTAGGAAAAGGCTGAGGGTGTCAGATCTTGGACATCAAGATATAGGTTTGCATGCAGATGCAGGAATTTGCAGTGATGTTTCCTTGTTCTCACAGCCAAATGTAGAAAGGAGTATTGGTGATATTTCCTCTTGCAGCAATATTGATGATAAACTTGATCCAGATTCTGGAATGGAGATGAGCTACCCATCAAATGTCAACAGTGGTGATGTTCCTGTGTCTACCACGGGTAATATTTCACACCTGGACCAGAGTTTCAGTGGCTATGTTCAACAGCCTACTTTTGTGAGTGGATGGATGTATGTGAATGAACATGGACAAATGTGTGGTCCCTATATAAAGGAGCAGTTATATGAGGGCCTAACAACTGGTTTCTTGCCATTTGAGCTTCCTGTATATCCTGTGATCAATGGCACAATAATGAACCCTGTACCATTGAATTATTTCAAGCAGTTTCCTGACCATGTTTCCACTGGGTTTGCATATCTGAGTATGAGTATCTCAGGCTCAAGAATGCCTTCAAATTGCTCCTCCTCTTCTTGTAAGGATATGGCAGTATATGGGCAAGATAGATCTTTTGAGCCTGCTGCTCTTTTGGCTGTTAACCCTGTTTCACAGTCTGTTTCGCAGTCACATATCAATTACTACATGAAGGAATCCAATCACATAAATTCAAACTCAGAAGCATTCAACAGTATAATATCTTGTCAGATGTTAGGTGAAGAATGTTGTTGGCTTTATGAGGATGAAAAGGGTATGAAACATGGACCACATTCGATTTCAGAATTGATTTCCTGGCACCGCCATGGATATCTTGGAGATAAAACAGTGATCTCTCATTCTGAAAATAAGTATGGGACCTTTTTGCTACTGTCTGCTGTAAATGCTTTGAAAGGAGACGGATCTGGAACCATCTGTGAAATATCTGAAAATGTTTCTTCCCAATTGCACATGGGTATCATGAAAGCTGCCCGAAGAGTTGTGTTAGATGGCATTATTGGTGATATCATTGCAGAATTTGTTGCGGAAAAGAAACAAAAGAGGCGTAAGATTGAATCAGCTGATCAGACTTCTGAGACTTGCATGTTGGACAATAAAATGGTGTCTACGTCTTCTGTGGAGATGAGTAAAGGTACTGCCATTCCAAGTGAGACTGCAACTTCCCATATTTTGGATGATAAGGCTTGTCATGAAATTTCCAGACCATCTTCAACAAACTTTAAATCAGTTGGAAGCATTGAAAATTTTTGGTGGTCATATGCTGTTGTTCGTAAAGTACTTTCTGATTATTGCTTGGAAGTCATGTGGAATGCAGTGTTTTTTGACACAGTGTCAGAGTTCTTATTTTCCTGGAGGAAGAGGAAACTTTGGTCTCATCCTAAGCCTCAGCCATCTGTTAATGGATGTAAAGATTATGTTGAAAAGAGTGAATTAGATGCTTTGGTTCTCAGGCCAGGTTCCTCTGTATGCAATGCTGATGGCAATATTCAGTTTGGAGTGCTGGCAACAGAAAGAGATGATCATCCTCAGCTACTATCTTCTCCTAGTAGCCTCAAAGGTGGAAACTTACTAGAAGGTCAAATGGTTTCATGCACTTATCATAACTCTATAGATTTGACATGCATTCTTGAAAGTGTGGAGAATGAGCTTCACTTCTCTTCAAAGTTGTCTTTAGCTGATTATATTCAAACTTTTGTTGAAAAGGAAGTGAACAAATTAATTCCTTCTCAAGAAGACGGAAAATTGAGTGAGGTTGCGGTTAATGACTGTGGTTTCCCTGAGATACTTACTTGTAAAACATCTGTGAAGGAAATTCTAAATTGCAAATCTGAGGATCCTGTAAAAGATGGTTATTCATTTTGTGTGTCTGCATCTGGAAATCATATGTCTAATGTGTTCTCAAAAGCATTTAAAGAATTGTGTGGGTATTTAGACGAGGTGGTTGATGAAGAGGAGATTGGTGACCTACCACCTGGATTTGACAAGAAATCTAATTTTTTTTTCCCAAACTACAATTTGAAATTTCGACCTTCAAGGTTACGTGAACGTAATCCTAAGATTGCAGAATATGTTGCAACTGCACTGTGCCGACAGAAGCTTCATGATGAAGTTCTAAAAGAGTGGAAGTCGTCATTCCTTGATTCTGCATTTAATGAAGTTTTAAAATCATCATGTACCATAAAGAAACGTTTTCAGTCTTATGGTCATAAGAAAGGGAAAACATTCAGTGCAAACAAGGAACAATTGAATGTTGCTACTTCTGGACTCAGAAGAGTGAAGGAAGGAGCAAAAAGTTCGTCTGGAGCTCCTCAGGCGATTGGAAAGTATACATATCACCGCAAGAAGCTGTCACGTAAAGAGTTGTGTTCCTCTCAATCTGTGAAAGAAGATGATTCAGGGCCAGGGAAGCAGCCTGTGGCTAAGTTAAGGAAACCTGTTTCTGGGGGTGTGAACGAGACTGCAGAAGATAAAATAACTGCTGTTAAACGTGGAAAGGCTATGGTGATTAAAGAGAAGAAGGATACATCTGCTAAGGGCAGGCCTTCTCCTGTCATTGTCAATAGTAGCTCACTCAGTGATCAATTATCCTTGAAGAATAAAACTAGTCGGAAAGTTTTGAAGAATACAGTTCAAAATGATGATATGGATGTTGTAAAGTCTAATGAAAAAAGGCTTTCAGCTTCAACAAATAATAGTGTTGGCTTGAAGAAGGTGGTTAGAAGTGATGTCTGTGATAGCGTCATTCAAGGGAAGACCACTGGTCAATGCTCCAAAGAGATGCTAAATGCAACAAAAAAAGTATCAAAATCAAAAAGGAAGCATCAGAGAGATGGTATAACATCCTCACATCCTGCAAAGGTTTTGAAAATTTCAAGTAATGGTGCCAGTCTGGGAGCTAGCAAACAGGCTACTGTGGCAAGGAGGAAATCTGCTAAATCCAAGCCATTGAATTTATGTCCTAGATCTGATGGATGTGCTAGGACTTCTATTGATGGTTGGGAATGGCATAAATGGTCTCAAAGTGCCAGTCCTGCATATAGAGCACGTGTCAGGGGTGTTTCATCTATACAAAACAAGCGCATAGATTCTGAAAATAATTTATCTCAGTTGTCAAATGGTAAGGGTCTTTCTGCAAGAACAAATAGGGTGAAATTGCGTAATCTTCTTGCTGCTGCAGAGGGTGCAGATCTTCTTAAAGTGCCTCAATTGAAGGCAAGGAAAAAGCGATTACGTTTTCAAAGGAGCAAGATACATGACTGGGGTCTTGTTGCCTTGGAGCCAATAGAGGCAGAGGACTTTGTCATTGAATATATTGGAGAACTAATTCGTCCTCGGATATCTGATATACGTGAGCGTCAATATGAGAAAATGGGAATTGGAAGCAGTTACCTTTTTAGACTTGATGATGGTTATGTGGTTGATGCTACAAAGAGAGGTGGGGTTGCAAGATTTATTAACCATTCTTGTGAGCCTAACTGTTATACAAAGGTTATATCTGTTGAGGGTCAAAAGAAGATTTTTATATATGCAAAACGGCATATAGCCGCTGGTGAAGAAATCACATACAATTATAAGTTCCCCTTGGAAGAGAAAAAGATTCCCTGCAACTGTGGTTCCAAAAAGTGTCGTGGATCACTAAATTAG 3690 0.3954 MVFSTAFLHDDGPFISRKRLRVSDLGHQDIGLHADAGICSDVSLFSQPNVERSIGDISSCSNIDDKLDPDSGMEMSYPSNVNSGDVPVSTTGNISHLDQSFSGYVQQPTFVSGWMYVNEHGQMCGPYIKEQLYEGLTTGFLPFELPVYPVINGTIMNPVPLNYFKQFPDHVSTGFAYLSMSISGSRMPSNCSSSSCKDMAVYGQDRSFEPAALLAVNPVSQSVSQSHINYYMKESNHINSNSEAFNSIISCQMLGEECCWLYEDEKGMKHGPHSISELISWHRHGYLGDKTVISHSENKYGTFLLLSAVNALKGDGSGTICEISENVSSQLHMGIMKAARRVVLDGIIGDIIAEFVAEKKQKRRKIESADQTSETCMLDNKMVSTSSVEMSKGTAIPSETATSHILDDKACHEISRPSSTNFKSVGSIENFWWSYAVVRKVLSDYCLEVMWNAVFFDTVSEFLFSWRKRKLWSHPKPQPSVNGCKDYVEKSELDALVLRPGSSVCNADGNIQFGVLATERDDHPQLLSSPSSLKGGNLLEGQMVSCTYHNSIDLTCILESVENELHFSSKLSLADYIQTFVEKEVNKLIPSQEDGKLSEVAVNDCGFPEILTCKTSVKEILNCKSEDPVKDGYSFCVSASGNHMSNVFSKAFKELCGYLDEVVDEEEIGDLPPGFDKKSNFFFPNYNLKFRPSRLRERNPKIAEYVATALCRQKLHDEVLKEWKSSFLDSAFNEVLKSSCTIKKRFQSYGHKKGKTFSANKEQLNVATSGLRRVKEGAKSSSGAPQAIGKYTYHRKKLSRKELCSSQSVKEDDSGPGKQPVAKLRKPVSGGVNETAEDKITAVKRGKAMVIKEKKDTSAKGRPSPVIVNSSSLSDQLSLKNKTSRKVLKNTVQNDDMDVVKSNEKRLSASTNNSVGLKKVVRSDVCDSVIQGKTTGQCSKEMLNATKKVSKSKRKHQRDGITSSHPAKVLKISSNGASLGASKQATVARRKSAKSKPLNLCPRSDGCARTSIDGWEWHKWSQSASPAYRARVRGVSSIQNKRIDSENNLSQLSNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRPRISDIRERQYEKMGIGSSYLFRLDDGYVVDATKRGGVARFINHSCEPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEEKKIPCNCGSKKCRGSLN. 1230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03904 1229 ProSiteProfiles Post-SET domain profile. 1213 1229 IPR003616 -
Seca6g03904 1229 ProSiteProfiles SET domain profile. 1090 1207 IPR001214 GO:0005515
Seca6g03904 1229 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 67 1229 IPR044570 GO:0042800|GO:0051568
Seca6g03904 1229 Gene3D SET domain 881 1229 IPR046341 -
Seca6g03904 1229 CDD SET_SETD1 1078 1225 IPR037841 GO:0042800|GO:0048188
Seca6g03904 1229 MobiDBLite consensus disorder prediction 802 833 - -
Seca6g03904 1229 ProSiteProfiles GYF domain profile. 257 307 IPR003169 GO:0005515
Seca6g03904 1229 Pfam SET domain 1102 1206 IPR001214 GO:0005515
Seca6g03904 1229 SMART set_7 1090 1213 IPR001214 GO:0005515
Seca6g03904 1229 SUPERFAMILY GYF domain 253 310 IPR035445 -
Seca6g03904 1229 Coils Coil 352 372 - -
Seca6g03904 1229 SUPERFAMILY SET domain 1086 1226 IPR046341 -
Seca6g03904 1229 Gene3D - 249 329 IPR035445 -
Seca6g03904 1229 SMART PostSET_3 1213 1229 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03904 Seca-Chr6 106727295 106742295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03904 1089 1229 C2H2 Transcription Factor Family AT2G23740 36.810 5.43e-19 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca6g03904 SET 1.8e-21 No_clan