Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03900 ATGTCACAGGTGAGAAGGTATGTTTACCACGATGTGGTTCGATTGGATGATCTAGAAAAGCTTATTGATTGTTCCAACATTCAGCCCTACACTATTAACAGTGCCAAAGTGATATTCTTAAATCAGAGGCCACAATCAAGGTCATGCAAAGGTACCGCCAATGCTTGCTTCACTTGTGACAGGATTCTTCAGGAGCCATTTCATTTCTGCTCTCTCTCATGCAAGGTTGATTACATGGTGTACGAGGGTCAAAGCTTGTCCAGCATTTTACATCGATTTGATGAATCTGACTTTGCAATTTCGCAGTTCGAGGGACTAAGGGTGGATAGCTCAGAGGTAATTGATGAAGATACCCAAATTGCCCCCAGTTCCTCTTATTCCAACACTGAGGCCACCAGCAATTCGGTAATTTCACACGAACCCCACAACATGACGAAGAAGGGCAAGTCCAATAGGTTCCTCCCTGGGATCGTCCTCTCTCTTGGCAGCAGAAGAAAGGGTGCTCCTCATAGGGCTCCTCTCTCCTAG 528 0.4564 MSQVRRYVYHDVVRLDDLEKLIDCSNIQPYTINSAKVIFLNQRPQSRSCKGTANACFTCDRILQEPFHFCSLSCKVDYMVYEGQSLSSILHRFDESDFAISQFEGLRVDSSEVIDEDTQIAPSSSYSNTEATSNSVISHEPHNMTKKGKSNRFLPGIVLSLGSRRKGAPHRAPLS. 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03900 175 Pfam PLATZ transcription factor 5 76 IPR006734 -
Seca6g03900 175 MobiDBLite consensus disorder prediction 121 149 - -
Seca6g03900 175 MobiDBLite consensus disorder prediction 121 141 - -
Seca6g03900 175 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 3 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03900 Seca-Chr6 106671302 106674089 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Seca6g03900 PLATZ 3.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03900 - - ccaj:109804478 328.946