Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03899 ATGGCGACAGCGTCGGTGGTGCCGGCTAACCGGCGGCGAGCTGCGAACGCCGCGGAGGAGTTGGACTTCGAGACGACGGAGGGTGTGAAGGCGATTGGAAGCTTCGAGGAGATGGGGATAAAGGACGACCTTCTCCGAGGAATCTACCAGTACGGCTTCGAGAAACCCTCCGCGATCCAACAACGTGCCGTTACGCCCATTATCCAGGGACGTGACGTCATCGCTCAAGCACAATCTGGAACCGGAAAAACCTCCATGATCGCCCTCACCGTCTGCCAAGTCGTCGACACCTCCGTCAGAGAGGTGCAGGCCTTAATCTTGTCACCAACGAGGGAACTGGCCTCGCAGACTGAAAAGGTTATATTGGCTATTGGGGATTTCATAAATATACAAGCACATGCTTGCATTGGTGGTAAAAGTGTGGGAGAAGATATAAGGAAACTCGAGTATGGAGTTCATGTGGTGTCTGGAACTCCTGGCCGAGTCTGTGACATGATCAAAAGAAGAACATTGCGCACAAGAGCTATCAAGATGCTAGTTCTGGATGAATCTGATGAAATGTTGAGCAGAGGGTTTAAAGATCAAATTTATGATGTGTATAGATATCTTCCTCCAGACCTTCAGGTTGTCTTGATTTCTGCTACACTTCCTCATGAAATACTGGAGATGACAAATAAGTTCATGACAGAACCTGTAAGGATCCTTGTAAAACGTGATGAATTGACATTGGAGGGCATCAAGCAATTTTTTGTTGCAGTCGAAAGGGAGGAATGGAAGTTTGATACTCTTTGTGATCTATATGATACTCTCACAATCACTCAAGCTGTTATATTCTGTAACACTAAGCGAAAGGTGGACTGGTTAACTGAAAAAATGCGTAACAATAATTTTACTGTCTCATCAATGCATGGCGACATGCCTCAAAAAGAAAGAGATGCAATTATGTCAGAATTTCGTGCGGGAACAACCCGGGTACTAATAACAACAGATGTTTGGGCACGTGGCCTTGATGTACAGCAGATATTGGTCTTAATTTTGTGCCCTGGTATTGTGTGTTATGTCTTTGGCAGGCTAAACGTTTCTCTTGTTATCAATTATGACCTTCCAAATAACCGTGAGCTGTACATTCATCGGATTGGCCGCTCAGGACGTTTTGGACGAAAGGGTGTTGCAATAAATTTTGTCAAGAGCGATGATATCAAGATCTTGAGAGATATTGAGCAATATTACAGTACTCAGATTGATGAAATGCCAATGAATGTTGCTGATCTTATTTAA 1278 0.446 MATASVVPANRRRAANAAEELDFETTEGVKAIGSFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVTPIIQGRDVIAQAQSGTGKTSMIALTVCQVVDTSVREVQALILSPTRELASQTEKVILAIGDFINIQAHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKMLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTNKFMTEPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMSEFRAGTTRVLITTDVWARGLDVQQILVLILCPGIVCYVFGRLNVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI. 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03899 425 CDD DEADc_EIF4AIII_DDX48 35 235 - -
Seca6g03899 425 CDD SF2_C_DEAD 246 395 - -
Seca6g03899 425 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 245 425 IPR001650 -
Seca6g03899 425 SMART helicmild6 286 386 IPR001650 -
Seca6g03899 425 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 33 61 IPR014014 GO:0003724
Seca6g03899 425 SMART ultradead3 52 249 IPR014001 -
Seca6g03899 425 Gene3D - 18 237 IPR027417 -
Seca6g03899 425 FunFam Eukaryotic initiation factor 4A-III 16 237 - -
Seca6g03899 425 Gene3D - 238 425 IPR027417 -
Seca6g03899 425 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 30 408 - -
Seca6g03899 425 Pfam DEAD/DEAH box helicase 58 220 IPR011545 GO:0003676|GO:0005524
Seca6g03899 425 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 64 234 IPR014001 -
Seca6g03899 425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 408 IPR027417 -
Seca6g03899 425 Pfam Helicase conserved C-terminal domain 359 386 IPR001650 -
Seca6g03899 425 Pfam Helicase conserved C-terminal domain 259 346 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03899 Seca-Chr6 106660269 106664500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03899 19 425 Eukaryotic Initiation Factors Gene Family AT3G19760 84.767 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03899 K13025 - gmx:100795032 760.755