Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03896 ATGGAAGAGGCACGTAATAAGGGAGATAGAGATATCGATGAAGACAAAGAGAAAGGAGGAGAAGTTGAAGAAGAAGAAGTGAAGTACCGTGGTGTGAGGAAGAGACCATGGGGTAAGTATGGAGCTGAAATTAGAGACCCTACAAAGCGAGGTGCTCTTGCTATCCTTAATTTTCCTGATGAGTTCCATTCTCATCTCCCTTTTATATCTTCATCTTCTATTGGAAGTAATTCTTCTTCTTCTGCTGCTGCTGCAGCACATGCACAACAACAAATTGAGATGCAAGTTATTGAGTTTGAGTACTTGGATAACAAAGTATTGGAAGACCTCCTTGACTTTGAGACACTAAGAACTGATGATGATGATGATGAAGAAGAAGTGAAGTACCGTGGTGTGAGGAAGAGACCATGGGGTAAGTATGGAGCTGAAATTAGAGACCCTACAAAGCCTACGGGAAGGCAATGGTTAGGAACATTTGATAGTGCTGAAGAAGCAGCTAGAGCTTATGATCGTGCTGCCATTGCATTAAGGGGTGCTCTTGCTATCCTCAATTTTCCTCATGAGTTTCATTCTCATCTCCCTTTTGTCTCATCTGCATCTTCTACCACTGTCATTGGGAGTTCTTCTAATTCTGCTGCTACACAACAACAGAGGGAAGTTATTGAGTTTGAGTATTTAGATGACAAGGTGTTGGAAGACCTTCTTGACTCAACAGTGCAAGAGATGAAAAGAATGGAAGACTAG 744 0.418 MEEARNKGDRDIDEDKEKGGEVEEEEVKYRGVRKRPWGKYGAEIRDPTKRGALAILNFPDEFHSHLPFISSSSIGSNSSSSAAAAAHAQQQIEMQVIEFEYLDNKVLEDLLDFETLRTDDDDDEEEVKYRGVRKRPWGKYGAEIRDPTKPTGRQWLGTFDSAEEAARAYDRAAIALRGALAILNFPHEFHSHLPFVSSASSTTVIGSSSNSAATQQQREVIEFEYLDDKVLEDLLDSTVQEMKRMED. 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03896 247 ProSiteProfiles AP2/ERF domain profile. 128 186 IPR001471 GO:0003700|GO:0006355
Seca6g03896 247 CDD AP2 128 187 IPR001471 GO:0003700|GO:0006355
Seca6g03896 247 SUPERFAMILY DNA-binding domain 28 59 IPR016177 GO:0003677
Seca6g03896 247 Gene3D AP2/ERF domain 127 187 IPR036955 GO:0003700|GO:0006355
Seca6g03896 247 Gene3D AP2/ERF domain 27 100 IPR036955 GO:0003700|GO:0006355
Seca6g03896 247 ProSiteProfiles AP2/ERF domain profile. 28 114 IPR001471 GO:0003700|GO:0006355
Seca6g03896 247 PANTHER DNA-BINDING DOMAIN 23 52 IPR044808 GO:0003700|GO:0009873
Seca6g03896 247 SMART rav1_2 28 65 IPR001471 GO:0003700|GO:0006355
Seca6g03896 247 SMART rav1_2 128 192 IPR001471 GO:0003700|GO:0006355
Seca6g03896 247 Pfam AP2 domain 128 178 IPR001471 GO:0003700|GO:0006355
Seca6g03896 247 MobiDBLite consensus disorder prediction 1 28 - -
Seca6g03896 247 FunFam Ethylene-responsive transcription factor 2 128 187 - -
Seca6g03896 247 PRINTS Ethylene responsive element binding protein signature 152 168 IPR001471 GO:0003700|GO:0006355
Seca6g03896 247 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Seca6g03896 247 SUPERFAMILY DNA-binding domain 128 188 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03896 Seca-Chr6 106614891 106629293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03896 123 244 AP2-EREBP Transcription Factor Family AT3G23230 58.594 5.45e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca6g03896 AP2 6.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03896 - - gmx:100807295 176.407