Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03865 ATGAAGTATATTCGGAGCAACAGCTTGAAGAGGCTCTTCTCATTTGGAAGACGCAGTTTTGGGGGAGAAAATGATGACAGCGTGGTGGTTACTTCTCCTGAAGAACACCCTCCAAGACCCTTTTGGAAATGCTTCTCTTATGAAGAGTTGTTCCTTGCCACCAATGGCTTCAGCTCAGGAAATTTGGTTGGGAAAGGAGGGTATGCAGAGGTTTACAAGGGAATACTGAATGGTGGTGAAGAAATTGCTGTGAAGAGGCTCACAAGAACTCCAAGGGATGAGAGGAAGGAGAAGGAGTTCCTAACAGAGATTGGTACAATTGGTCATGTGCGCCATTCCAACGTATTGCCTCTTCTGGGGTGTTGTATTGACAATGGACTTTACCTCGTTTTTGAGCTATCCACCGTAGGCTCTGTTGCTTCTCTTATCCATGATGAGAAAAAGCCCCCTCTTGATTGGAAAACAAGGTACAACATAGTTCTTGGGACAGCACGTGGCCTCCACTACTTGCACAAAGGTTGCCAGAGGAGGATCATTCACAGGGACATCAAGGCATCAAACATTCTGCTGACAGCAGATTTTGAGCCACAGATATCTGATTTTGGACTAGCAAAGTGGCTTCCATCTCAGTGGACTCATCATTCAATAGCCCCAATAGAAGGGACATTTGGGCATTTGGCACCTGAGTACTATATGCACGGAGTTGTGGATGAGAAGACAGATGTATTTGCCTTTGGAGTGTTCTTGCTAGAAGTCATCTCAGGGAAGAAACCCGTGGATGGGTCTCACCAAAGCTTGCACAGCTGGGCTAAGCCAATATTGAACAATGGGGAGATAGAAAAGTTGGTAGATCCAAGGCTTGGAGGGGCTTATGATGTGACACAGTTTACTAGACTCGCCTTTGCTGCCTCGCTGTGCATCAGGGCTTCTTCAACTTGGCGACCCACCATGGACGAGGTATTAAATAAAGTAAAATTATGCATTGAGTGA 990 0.4596 MKYIRSNSLKRLFSFGRRSFGGENDDSVVVTSPEEHPPRPFWKCFSYEELFLATNGFSSGNLVGKGGYAEVYKGILNGGEEIAVKRLTRTPRDERKEKEFLTEIGTIGHVRHSNVLPLLGCCIDNGLYLVFELSTVGSVASLIHDEKKPPLDWKTRYNIVLGTARGLHYLHKGCQRRIIHRDIKASNILLTADFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYMHGVVDEKTDVFAFGVFLLEVISGKKPVDGSHQSLHSWAKPILNNGEIEKLVDPRLGGAYDVTQFTRLAFAASLCIRASSTWRPTMDEVLNKVKLCIE. 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03865 329 FunFam Putative receptor-like serine/threonine-protein kinase 135 327 - -
Seca6g03865 329 SUPERFAMILY Protein kinase-like (PK-like) 34 323 IPR011009 -
Seca6g03865 329 ProSiteProfiles Protein kinase domain profile. 57 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03865 329 SMART serkin_6 57 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03865 329 Pfam Protein tyrosine and serine/threonine kinase 60 264 IPR001245 GO:0004672|GO:0006468
Seca6g03865 329 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Seca6g03865 329 FunFam Putative receptor-like serine/threonine-protein kinase 24 133 - -
Seca6g03865 329 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
Seca6g03865 329 Gene3D Phosphorylase Kinase; domain 1 29 132 - -
Seca6g03865 329 PANTHER OS08G0249100 PROTEIN 33 322 IPR046958 -
Seca6g03865 329 PIRSF ILK 36 328 - -
Seca6g03865 329 Gene3D Transferase(Phosphotransferase) domain 1 135 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03865 Seca-Chr6 106215420 106219124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03865 45 320 Trihelix Transcription Factor Family AT1G68690 44.912 3.77e-70 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca6g03865 PK_Tyr_Ser-Thr 4.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03865 - - gmx:100801765 590.882