Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03864 ATGGTTGCAATGTCCTCTTTAACGAGCATGGCTCCTCAAAAGGCCATTATTGCTGAGACTGGAGAGCGTGTTGATGTCAGTGATGTTAAGATCAACACCATCCTTGCTGTCAAGGCTGGTGATACTATTCCTCTTGATGGAGTCGTTGTGGAAGGAAAGTGTGAAGTTGATGAAAAGATGTTAACAGGAGAATCATTCCCTGTCACCAAAGAATTAGATTCATTAGTCTGGGCTGGAACTATTAACCTGAATGGATATATAAGTGTAAAAACTACCGTGTTGGCAAAAGACACGGTGGTGGCAAGAATGTCAAAACTTGTTGAAGAGGCTTCTAGCAGAAAATCTCGAGCACAAAGATTCATAGATAAATTTTCAAAGTACTATATTCCTGTGGTTGTCTTGATTTCAGCTAGCATTGCTGTGGTACCAGCTGCATTAGGAGTTCCTGATTTTGACCCTTGGTTTCATCTGGCAATTGTGGTTTTATTGAGTGGATGCCCTTGTGCTCTCATCCTCTCAACACCTGTTGCAATCTTTTGTGCTCTCACAAAAGCTGCAATAAGTGGTTTACTACTGAAAGGTGGAGATTATCTTGAAACGCTTTCTGGAATCAAGACAGTGGCTTTTGATAAAACAGGCACAATAACAAGAGGAGAGTTCACTGTATCAGACTTTAGTGCTGTAGATGACATTAGCATTGAAACCTTATTATACTGGGTTTCAAGTATTGAGAGTAAATCAAGTCATCCAATGTCAGCTGCACTAGTGGAATATGGAATGTTGCACTCTATAAAACCAGTCCCAGAAAATGTAGAGAATTTTCAAAATTTTCCAGGGGAAGGAATTTCTGGCACAATTGATGGGAGAGATATTTATATAGGCAATAGGAGAATTGCTGTCAGAGCTGGCTGTGAAAGTGTCGATTGCCATGTGCAAGTTGAAAGCCATGAGATTTCTACCCAGAAGCAATACTGTGAACCAACTCTAGTTGGAGTCTTCAGCCTAGTTGATAGTTGCAGATCAGGTGCTTTGGAGGCAATAGAAGAGCTAAAGTTATTAGGCGTCAGATCAGCCATGCTGACAGGAGATAGCGCTCGGGTTGCTATGTATGTTCAGAGTCAGTTGAACCATGCTCTGGACATTGTTCATGCAGAACTTCTACCTCATGAAAAGGCAATGATTATTGAGAATTTCAAGAAAGATGGGCTAACAGCCATGATTGGAGATGGCATTAATGATGCTCCTGCATTAGCTGCAGCTGACATTGGCATCTCAATGGGAATATCAGGTTCAGCACTTGCTAATGAGACAGGCAATGCAATTCTCATGTCAAATGACATCAGAAAAATACCTGAAGCCATTAGGCTAGCAAGAAAAACTATTAGAAAGCTCATTGAGAATGTCATTATTTCAATTGGCTCCAAGAGTGCCATACTGGCATTGGCAATTGCAGGATATCCATTAGTTTGGCTTGCTGTGTTGACTGATGTTGGGACCTGTTTACTTGTGATTCTCAATAGCATGTTAATTTTGCAAGAGAAACCAAAATATGAAAGAAAATCTACAAGGCCTAAATACGGCAACTTCTTGGAAGATAAGACCGTGACTCTACTTGACAAGCAAAGTAATGGTGATGAGAACCAAGGGCTTCTTAGTGCTGAAAAGTGTGGTAGAGTGCTGTAA 1683 0.4082 MVAMSSLTSMAPQKAIIAETGERVDVSDVKINTILAVKAGDTIPLDGVVVEGKCEVDEKMLTGESFPVTKELDSLVWAGTINLNGYISVKTTVLAKDTVVARMSKLVEEASSRKSRAQRFIDKFSKYYIPVVVLISASIAVVPAALGVPDFDPWFHLAIVVLLSGCPCALILSTPVAIFCALTKAAISGLLLKGGDYLETLSGIKTVAFDKTGTITRGEFTVSDFSAVDDISIETLLYWVSSIESKSSHPMSAALVEYGMLHSIKPVPENVENFQNFPGEGISGTIDGRDIYIGNRRIAVRAGCESVDCHVQVESHEISTQKQYCEPTLVGVFSLVDSCRSGALEAIEELKLLGVRSAMLTGDSARVAMYVQSQLNHALDIVHAELLPHEKAMIIENFKKDGLTAMIGDGINDAPALAAADIGISMGISGSALANETGNAILMSNDIRKIPEAIRLARKTIRKLIENVIISIGSKSAILALAIAGYPLVWLAVLTDVGTCLLVILNSMLILQEKPKYERKSTRPKYGNFLEDKTVTLLDKQSNGDENQGLLSAEKCGRVL. 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03864 560 Gene3D - 219 339 IPR023299 GO:0000166
Seca6g03864 560 PRINTS P-type cation-transporting ATPase superfamily signature 407 426 - -
Seca6g03864 560 PRINTS P-type cation-transporting ATPase superfamily signature 57 71 - -
Seca6g03864 560 PRINTS P-type cation-transporting ATPase superfamily signature 353 363 - -
Seca6g03864 560 PRINTS P-type cation-transporting ATPase superfamily signature 431 443 - -
Seca6g03864 560 PRINTS P-type cation-transporting ATPase superfamily signature 331 342 - -
Seca6g03864 560 PRINTS P-type cation-transporting ATPase superfamily signature 208 222 - -
Seca6g03864 560 Pfam E1-E2 ATPase 18 186 - -
Seca6g03864 560 SUPERFAMILY Calcium ATPase, transmembrane domain M 108 202 IPR023298 -
Seca6g03864 560 ProSitePatterns E1-E2 ATPases phosphorylation site. 210 216 IPR018303 -
Seca6g03864 560 Gene3D - 199 458 IPR023214 -
Seca6g03864 560 NCBIfam HAD-IC family P-type ATPase 4 488 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca6g03864 560 NCBIfam heavy metal translocating P-type ATPase 3 509 IPR027256 GO:0006812|GO:0016020|GO:0019829
Seca6g03864 560 SFLD p-type atpase 191 460 IPR044492 -
Seca6g03864 560 Pfam haloacid dehalogenase-like hydrolase 204 421 - -
Seca6g03864 560 FunFam Putative cadmium/zinc-transporting ATPase 3 219 339 - -
Seca6g03864 560 SUPERFAMILY Calcium ATPase, transduction domain A 22 107 IPR008250 -
Seca6g03864 560 ProSitePatterns Hypothetical cof family signature 2. 407 429 - -
Seca6g03864 560 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 3 514 - -
Seca6g03864 560 PRINTS H+-transporting ATPase (proton pump) signature 439 464 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca6g03864 560 PRINTS H+-transporting ATPase (proton pump) signature 407 423 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca6g03864 560 Gene3D - 2 111 - -
Seca6g03864 560 SUPERFAMILY HAD-like 206 508 IPR036412 -
Seca6g03864 560 NCBIfam cadmium family heavy metal-translocating P-type ATPase 3 511 - -
Seca6g03864 560 FunFam Copper-transporting ATPase 1, putative 1 111 - -
Seca6g03864 560 CDD P-type_ATPase_HM 3 509 - -
Seca6g03864 560 SFLD Haloacid Dehalogenase 191 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03864 Seca-Chr6 106206634 106211174 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03864 4 551 Primary Pumps ATPases AT4G30110 62.749 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03864 K01534 - gmx:100815324 932.939