Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03859 ATGAGTATTAACCATTTTGCAGCTGTGGTTGCGGTTAAGATAGGTATTTTGGTTTGTGTGTGCAGAAAAAGACATCAGGTTGGTGATAGATCAGTTAGTCCAGACTCACAATTTCTGACACTAACTATGGATAAATTTCTCATTGACATGGAAAGGGAAAAGCCAATCAGGTTTACTGGTCTGCAGCTAAGGATTGCAACAGAAAACTACTCTAACATGGTGGGGTCAGGAGGTTTTGGAGCAGTTTATAAGGGAATTTTTAGTAATGGAACCATGGTAGCTGTGAAGGTTCTACGTGGGAGTTCTAACAAGAAAATTGAGGAGCAGTTTATGGCAGAAGTGGGTACAATTGGTAGAATTCATCATTTTAATCTAGTTCGGTTATATGGGTTTTGCTTTGAAAGAAACTTGATTGCACTGGTTTATGAATACATGGGAAATGGCTCTCTTGATAGGTATCTGTTTCAGGAAAACAAGGCCTTAGGATATGAAAAACTTCATGAGATTGCTGTTGGGACAGCAAGAGGCATTGCTTACTTGCATGAAGAGTGTCAACAAAGGATAATACACTATGACATAAAACCAGGAAATATTCTCTTGGACAGGAACTTTAATCCTAAAGTTGCTGATTTTGGTTTGGCCAAGCTTTGCAACAGGGAAAATACTCACATAACTATGACTGGTGGCAGGGGAACTCCTGGTTATGCTGCACCTGAGCTTTGGATGCCATTTCCTATAACTCACAAGTGTGATGTTTATAGCTTTGGTATGCTGTTATTTGAAATCATAGGTAGAAGAAGGAACCTTGACATTAAACTTCCTGAAAGCCAGGAGTGGTTTCCAATTTGGGTTTGGAAAAAGTTTGATGCTGGACAACTGGGGGAGTTAATAATTGTCTGTGGGATAGAGGAGCAAAATAAGGAGATAACAGAAAGAATGGTTAAGGTGGCTCTGTGTTGTGTTCAGTATAGGCCAGAATCAAGGCCTATAATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCAGTAGAAATTCCAAAGCCTTTGAACCCATTTCAGTACTTGATGGATGGGACTCTGGCTGCTGCTGGTTCAGTCCAAGTGTCACAGACCTATACAACAAGTATTTCTTCTGGCTCTTCTGTTATGGTGATGACGTTGGTTTTTGCTTGCTGTAGAAGATCTCAGAGTGATACCAGTTCAGACTCACGAATTCTGACCCTCACTGTGGATCAATTTCTGAACGATATAGAAAGAGAGAAGCCAATCAGGTTTACCAGTGAGAAGCTAAGGATTGCAACTGATAACTACTCCAACTTGTTGGGTTCAGGTGGTTTTGGAGAAGTTTATAAAGGATTTCTTAGTGATGAAACCATTGTAGCTGTGAAGGTTCTACGTGGGAGTTCTGACAAGAAAATTCAGCTGCAGTTTATGGCAGAAGTTGGTACAATTGGTAGGACTCATCATTTCAATCTTGTTCGGCTCTATGGATTTTGCTATGAAAGAAACTTTATGGCACTGGTGTATGAGTACATGGTGAATGGCTCTCTTGATAGGTATCTGTTTCAGGAAAATAAGACCTTAGGATATGAAAAGCTTCATGAGATTGCTGTTGGGACAGCAAGAGGCATTGCTTACTTGCATGAAGAGTGCCTACAAAGAATAATTCACTATGACATTAAACCAGGAAATATTCTCTTGGACAGAAATTTCAATCCTAAAGTTGCTGATTTTGGTTTGGCCAAGCTTTGCAACAGGGAAAATACTCACATAACTATGACTGGAGGCAGGGGAACTCCTGGTAGAAGAAGGAACCTTGACATTAAACTTCCTGAAAGCCAGGAGTGGTTTCCAATTTGGGTTTGGAAAAAGTTTGATGCTGGACAACTGGGGGAGTTAATAATTGTCTGTGGGATAGAGGAGCAAAATAAGGAGATAACAGAAAGAATGGTTAAGGTGGCTCTGTGTTGTGTTCAGTATAGGCCAGAATCAAGACCTATAATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCAGTAGAAATTCCAAAGCCTTTGAACCCATTTCAGTACTTGATGGATGGGACTCTGGCTGCTGCTGATTCAGTCCAAGTGTCACAGACCTATACAACAAGTATTTCTTCTGGCTCTTCTGTTATGGTGATGATTATGTTGGTTTTTGCTTGCTATAGAAGATCTCAAAGTGATACCAGTTTAGACTCACGAATTCTGACCCTCACTGTGGATCAATTTCTGAACGATATGGAAAGAGAGAAGCCAATCAGGTTTACCAGTGAGCAGCTAAGGATTGCAACTTATAACTACTCCAACTTGTTGGGGTCAGGTGGTTTTGGAGAAGTTTATAAAGGAAATTTTAGTGATGAAACCATTGTAGCTGTGAAGGTTCTACGTGGGAGTTCTGACAAGAAAATTCAGCAGCAGTTTATGGCAGAAGTTGGTACAATTGGTAGGACTCATCATTTCAATCTTGTTCGGCTCTATGGATTTTGCTATGAAAGAAACTTTATGGCACTGGTGTATGAGTACATGGTGAATGGCTCTCTTGATAGGTATCTGTTTCAGGAAAACAATACCTTAGGATATGAAAAGCTTCATGAGATTGCTGTTGGGACAGCCAGAGGCATTGCTTACTTGCATGAAGAGTGCCTACAAAGAATAATCCACTATGACATTAAACCAGGAAATATTCTCTTGGACAGAAATTTCAATCCTAAAGTTGCTGATTTTGGTTTGGCCAAACTTTGCAATAGGGAAAATACTCACATAACCATGACTGGGGGAAGGGGAACCCCTGGTTATGCTGCACCTGAGCTTTGGATGCCATTTCCTATAACTCACAAGTGTGATGTTTATAGCTTTGGTATGCTGTTATTTGAAATCATAGGCAGGAGAAAAAACCTTGACTTAAAACTTTCTGAAAGCCAGGAGTGGTTTCCAATCTGGGTTTGGAAAAAATTTGATGCTGGACAATTAAGGGAGTTAATATCAGTCTGTGGGATAGAGGAGAAAAATAAGGAGATAGCAGAAAGAATGGTTAAGGTAGCTCTTTGTTGTGTTCAGTATAGGCCAGAATCAAGGCCTATAATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCTGTAGAAATTCCAAAGCCTTTGAACCCATTTCAGCATTTTATGGATGAGACTTTGGCTCCTGATCCAGCCCAAGTGTCACAGGCCTATACAACAAATATTTCTTCTGGCTCTGCTGTTATTGTAAGTGAGTCTAGCATTGTAAGTGCTACTCCTATTAAGAGCAAGTATGAGATTGAATTAGCCTCTAGCAATGGATGA 3330 0.4018 MSINHFAAVVAVKIGILVCVCRKRHQVGDRSVSPDSQFLTLTMDKFLIDMEREKPIRFTGLQLRIATENYSNMVGSGGFGAVYKGIFSNGTMVAVKVLRGSSNKKIEEQFMAEVGTIGRIHHFNLVRLYGFCFERNLIALVYEYMGNGSLDRYLFQENKALGYEKLHEIAVGTARGIAYLHEECQQRIIHYDIKPGNILLDRNFNPKVADFGLAKLCNRENTHITMTGGRGTPGYAAPELWMPFPITHKCDVYSFGMLLFEIIGRRRNLDIKLPESQEWFPIWVWKKFDAGQLGELIIVCGIEEQNKEITERMVKVALCCVQYRPESRPIMSVVVKMLEGSVEIPKPLNPFQYLMDGTLAAAGSVQVSQTYTTSISSGSSVMVMTLVFACCRRSQSDTSSDSRILTLTVDQFLNDIEREKPIRFTSEKLRIATDNYSNLLGSGGFGEVYKGFLSDETIVAVKVLRGSSDKKIQLQFMAEVGTIGRTHHFNLVRLYGFCYERNFMALVYEYMVNGSLDRYLFQENKTLGYEKLHEIAVGTARGIAYLHEECLQRIIHYDIKPGNILLDRNFNPKVADFGLAKLCNRENTHITMTGGRGTPGRRRNLDIKLPESQEWFPIWVWKKFDAGQLGELIIVCGIEEQNKEITERMVKVALCCVQYRPESRPIMSVVVKMLEGSVEIPKPLNPFQYLMDGTLAAADSVQVSQTYTTSISSGSSVMVMIMLVFACYRRSQSDTSLDSRILTLTVDQFLNDMEREKPIRFTSEQLRIATYNYSNLLGSGGFGEVYKGNFSDETIVAVKVLRGSSDKKIQQQFMAEVGTIGRTHHFNLVRLYGFCYERNFMALVYEYMVNGSLDRYLFQENNTLGYEKLHEIAVGTARGIAYLHEECLQRIIHYDIKPGNILLDRNFNPKVADFGLAKLCNRENTHITMTGGRGTPGYAAPELWMPFPITHKCDVYSFGMLLFEIIGRRKNLDLKLSESQEWFPIWVWKKFDAGQLRELISVCGIEEKNKEIAERMVKVALCCVQYRPESRPIMSVVVKMLEGSVEIPKPLNPFQHFMDETLAPDPAQVSQAYTTNISSGSAVIVSESSIVSATPIKSKYEIELASSNG. 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03859 1109 Pfam Protein tyrosine and serine/threonine kinase 71 338 IPR001245 GO:0004672|GO:0006468
Seca6g03859 1109 Pfam Protein tyrosine and serine/threonine kinase 774 1041 IPR001245 GO:0004672|GO:0006468
Seca6g03859 1109 FunFam Os07g0541700 protein 511 598 - -
Seca6g03859 1109 Gene3D Phosphorylase Kinase; domain 1 44 144 - -
Seca6g03859 1109 Gene3D Phosphorylase Kinase; domain 1 409 510 - -
Seca6g03859 1109 Gene3D Phosphorylase Kinase; domain 1 746 847 - -
Seca6g03859 1109 ProSiteProfiles Protein kinase domain profile. 68 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03859 1109 Pfam Protein kinase domain 438 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03859 1109 Gene3D Transferase(Phosphotransferase) domain 1 848 1049 - -
Seca6g03859 1109 Gene3D Transferase(Phosphotransferase) domain 1 145 346 - -
Seca6g03859 1109 Gene3D Transferase(Phosphotransferase) domain 1 511 604 - -
Seca6g03859 1109 FunFam serine/threonine-protein kinase PBS1-like 42 144 - -
Seca6g03859 1109 FunFam serine/threonine-protein kinase PBS1-like 745 847 - -
Seca6g03859 1109 SMART serkin_6 434 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03859 1109 SMART serkin_6 771 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03859 1109 SMART serkin_6 68 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03859 1109 SUPERFAMILY Protein kinase-like (PK-like) 763 1064 IPR011009 -
Seca6g03859 1109 ProSiteProfiles Protein kinase domain profile. 434 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03859 1109 SUPERFAMILY Protein kinase-like (PK-like) 51 339 IPR011009 -
Seca6g03859 1109 FunFam Putative receptor-like protein kinase 848 1049 - -
Seca6g03859 1109 SUPERFAMILY Protein kinase-like (PK-like) 424 704 IPR011009 -
Seca6g03859 1109 FunFam Putative receptor-like protein kinase 145 346 - -
Seca6g03859 1109 FunFam serine/threonine-protein kinase PBS1-like 408 510 - -
Seca6g03859 1109 ProSitePatterns Protein kinases ATP-binding region signature. 74 96 IPR017441 GO:0005524
Seca6g03859 1109 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Seca6g03859 1109 ProSiteProfiles Protein kinase domain profile. 771 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03859 1109 ProSitePatterns Serine/Threonine protein kinases active-site signature. 891 903 IPR008271 GO:0004672|GO:0006468
Seca6g03859 1109 ProSitePatterns Serine/Threonine protein kinases active-site signature. 554 566 IPR008271 GO:0004672|GO:0006468
Seca6g03859 1109 ProSitePatterns Protein kinases ATP-binding region signature. 440 462 IPR017441 GO:0005524
Seca6g03859 1109 PANTHER OS07G0415500 PROTEIN 716 1054 - -
Seca6g03859 1109 ProSitePatterns Protein kinases ATP-binding region signature. 777 799 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03859 Seca-Chr6 106168657 106183868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03859 423 735 Receptor kinase-like Gene Family AT5G38280 35.311 1.17e-58 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Seca6g03859 PK_Tyr_Ser-Thr 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03859 - - ecad:122594152 822.772