Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03858 ATGGAGTGGGACAGCAATTCCGACCTTAGCGGCGATGAAGATGACGCCTCTGCCTCCTCTTTCCTCCTAAACGACGACGTTGGACCCCTTCCTTTCCCCGTCCTCCAAACGGCGCCCTGTGGATTCGTCGTCACCGACGCCCTCGAACATGACCACCCTATCATATACGTCAACGCTGTTTTCGAGATGGTCACTGGTTACCGTGCTGAAGAAGTTCTCGGTCGCAACTGTCGTTTCTTGCAGTGTCGAGGTCCATTTGCTAAAAGAAGGCATCCATTGGTGGACTCAACAGTAGTTTCAGAAATTAGAAGATGCCTCGAAGAAGGGGTTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGTTCTCCACTTATGAACAGATTGCAGCTGACACCTATATATGGAGATGATGATGAGATAACTCATGTAATTGGAATCCAGTTCTTCACAGAAGCAAACATTGATCTTGGTCCTGTTCCGGGTTCTACAATTAAGGAATCTGCTAAATCATCAGATCAATTTCATTCTGTGCTTTCCTCTCTGCATCCTCTTCCAGTGGGGGACCGGAATGTAACTCGTGGAGTTTGTGGGATATTGCAATTGAGTGATGAGGTAATGTCTCTCAAGATACTTGCTCGCTTAACTCCTAGAGATATTGCATCCGTTGGTTCTGTCTGTAGGCGATTGTATGAACTAACAAGAAATGAAGACCTTTGGAGAATGGTTTGCCAAAATGCATGGGGCAGTGAGACTACACGTGTTTTAGAGACTGTGCCTGGAGCAAGAAGACTTGGATGGGGTCGGCTGGCGAGGGAACTGACCACTCTTGAAGCAGCAGCATGGAGAAAACTGACTGTTGGAGGTGCTGTTGAACCGTCACGATGTAATTTTAGTGCATGTGCAGTTGGCAATAGAGTTGTCCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGACACCTTTGTATTGGATCTCAATTCTAGTAATCCTGAGTGGCAACATGTCCAGGTGAGCTCTCCGCCCCCTGGTCGGTGGGGCCACACACTTTCTTGTGTCAATGGTTCCCGTTTGGTTGTATTTGGAGGCTGTGGAAGACAAGGCTTGCTCAATGATGTGTTTGTTCTGGACCTGGATGCAAAGCCTCCAACTTGGCGTGAAATTTCTGGATTGGCACCTCCCCTTCCAAGATCATGGCATAGCTCCTGTACTCTTGATGGTACTAAGTTGATAGTTTCTGGTGGCTGTGCTGATTCTGGAGTACTCTTGAGTGATACCTTCCTGCTTGATTTGTCGATGGAGAAACCTGTCTGGAGAGAGATACCAGTGGCATGGACTCCACCTTCTCGCCTGGGCCACACACTATCTGTTTATGGTGGTAGGAAAATACTGATGTTCGGGGGTCTGGCCAAGAGTGGGCCCCTGCGATTTCGCTCCAGTGATGTATTCACGATGGACTTAAGTGAGGAGGAACCATGCTGGAGATGTGTAACGGGGAGTGGAATGCCTGGTGCTGGAAATCCTGGGGGCATAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTTACCCTTCCAGGTGGGAGAATTCTGATATTTGGTGGGTCTGTTGCAGGCCTTCATTCCGCATCCCAGCTTTACATACTTGATCCAACTGATGAGAAGCCTACATGGAGAATCCTAAATGTTCCTGGGCGCCCTCCAAGATTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGGACAAGAGCTATTGTACTGGGTGGACAAACTGGGGAGGAATGGATGCTAAGTGAGCTCCATGAACTTTCCCTGGCAAGTTCTGCCATCTAG 1839 0.4834 MEWDSNSDLSGDEDDASASSFLLNDDVGPLPFPVLQTAPCGFVVTDALEHDHPIIYVNAVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLEEGVEFQGELLNFRKDGSPLMNRLQLTPIYGDDDEITHVIGIQFFTEANIDLGPVPGSTIKESAKSSDQFHSVLSSLHPLPVGDRNVTRGVCGILQLSDEVMSLKILARLTPRDIASVGSVCRRLYELTRNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSRLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVTLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSAI. 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03858 612 Gene3D - 196 244 - -
Seca6g03858 612 Gene3D PAS domain 32 160 - -
Seca6g03858 612 FunFam Adagio protein 1 32 160 - -
Seca6g03858 612 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 20 609 - -
Seca6g03858 612 FunFam Putative LOV domain-containing protein 273 477 - -
Seca6g03858 612 Pfam Kelch motif 520 567 IPR011498 GO:0005515
Seca6g03858 612 Pfam Kelch motif 453 504 IPR011498 GO:0005515
Seca6g03858 612 SUPERFAMILY Galactose oxidase, central domain 282 597 IPR011043 -
Seca6g03858 612 CDD PAS 38 148 IPR000014 -
Seca6g03858 612 FunFam Putative LOV domain-containing protein 478 611 - -
Seca6g03858 612 Gene3D - 441 611 IPR015915 GO:0005515
Seca6g03858 612 Pfam Galactose oxidase, central domain 358 407 - -
Seca6g03858 612 Pfam Galactose oxidase, central domain 296 346 - -
Seca6g03858 612 Gene3D - 274 427 IPR015915 GO:0005515
Seca6g03858 612 FunFam Adagio protein 1 197 244 - -
Seca6g03858 612 Pfam F-box-like 210 246 IPR001810 GO:0005515
Seca6g03858 612 SUPERFAMILY F-box domain 191 261 IPR036047 GO:0005515
Seca6g03858 612 ProSiteProfiles PAS repeat profile. 34 109 IPR000014 -
Seca6g03858 612 Pfam PAS domain 39 149 IPR000014 -
Seca6g03858 612 SUPERFAMILY PYP-like sensor domain (PAS domain) 38 149 IPR035965 -
Seca6g03858 612 CDD F-box_AtADO-like 199 245 - -
Seca6g03858 612 NCBIfam PAS domain S-box protein 50 148 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03858 Seca-Chr6 106156179 106164944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03858 34 150 AGC Kinase Gene Family AT5G58140 33.333 2.32e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03858 K12115 - gmx:100802828 1142.1