Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03855 ATGATAGCTGAGATCATAGTTATGTACCCAATTCAACACCGAAAGTACAGGGATGGAATTGACAACCTGTTGGTCCTCTTGATTGGAGGAATTCCCATTGCTATGCCTACTGTGTTGTCTGTGACTATGGCTATTGGTTCTCACAAGCTTTCTCAGCAAGGTGCCATCACCAAGAGAATGACTGCCATTGAAGAAATGGCTGGTATGGATGTCCTTTGCAGTGACAAGACAGGAACACTCACCCTTAACAAACTGAGTGTTGACAAGAACTTGATTGAGGTCTTTGCAAAGGGTGTTGACAAGGACCATGTGATCCTTCTAGCTGCAAGGGCTGCCAGGACTGAAAACCAGGATGCCATAGATGCTGCCATTGTTGGAATGCTTGCTGACCCAAAAGAGGCAAGAGCTGGAATAAGAGAGGTGCACTTCTTGCCTTTCAACCCTGTTGACAAGAGAACTGCTTTGACTTACATTGATGCTGATGGAAATTGGCACCGGGCTAGCAAGGGTGCTCCTGAGCAGATCATGACCCTTTGTAACCTCAGGGATGATGCTAAGAAGAAGGTTCATGCTATTATTGACAAATTTGCAGAAAGAGGACTTCGTTCACTTGCTGTTGCTAGACAGGAAGTTCCTGAGAAATCAAAAGACAGTGCTGGTGGTCCATGGCAGTTTGTTGGTTTGCTTTCACTGTTTGATCCCCCTAGGCATGACAGTGCTGAAACCATTCGCAGAGCTCTCAATCTTGGTGTAAATGTTAAGATGATTACAGGTGATCAACTTGCCATAGCTAAGGAGACTGGTCGGAGACTTGGTATGGGAACAAATATGTACCCATCCGCTTCCTTGCTTGGCCAAGACAAAGATGCAAGTATTGCTGCACTACCTATAGAAGAGTTGATTGAGAAGGCAGATGGATTTGCTGGAGTTTTTCCAGAGCACAAATATGAAATTGTAAAGAAGTTGCAAGAGAGGAAGCACATTTGTGGAATGACTGGAGATGGTGTGAATGATGCTCCTGCATTGAAGAAGGCTGATATTGGAATTGCTGTTGCTGATGCCACTGATGCTGCAAGAGGTGCTTCTGATATTGTCTTGACAGAACCTGGATTGAGTGTTATTATTAGTGCAGTCTTGACTAGTAGAGCTATTTTCCAAAGAATGAAGAACTACACGGTTGGTTGCTCTCTGCTTTCTTTGATCTATGCAGTATCTATCACTATCCGTATAGTGTTTGGCTTCATGTTTATTGCATTGATCTGGAAATTCGACTTCTCTCCTTTCATGGTTTTGATTATTGCCATTCTAAATGATGGGACAATCATGACAATTTCCAAGGACAGGGTTAAGCCATCTCCCATGCCTGATAGTTGGAAACTGAAAGAAATATTTGCTACTGGGGTTGTGCTTGGAGGTTACTTGGCACTAATGACTGTTATATTCTTCTGGGCAATGAAAGAAACAACCTTCTTCTCTGACAAATTTGGAGTTAGATCCCTGCATGACAGCCCAGATGAAATGATTGCTGCTTTGTATCTACAAGTCAGTATAGTTAGTCAGGCTTTGATCTTTGTAACCCGTTCACGCAGCTGGTCTTATGTTGAACGCCCTGGATTGCTGTTAATGAGTGCTTTTGTTATTGCTCAGCTGATTGCTACATTGATAGCAGTATATGCCAACTGGGGCTTTGCAAGGATCAAGGGAATTGGTTGGGGTTGGGCAGGAGTCATATGGCTCTACAGTGTTGTTTTCTATGTTCCTCTTGACATCATGAAGTTTGCCATCCGCTACATCTTGAGTGGCAAAGCTTGGCTGAATCTTCTTGAAAACAAGACTGCCTTCACCACCAAGAAAGACTATGGTAAAGAAGAGAGGGAAGCTCAATGGGCTCTTGCTCAAAGGACCCTGCATGGACTTCAACCACCAGAAACTTCTGGCATTTTCAATGAAAAGAGCAGTTACAGGGAACTGTCTGAGATTGCTGAGCAGGCCAAGAGACGAGCTGAAGTTGCAAGGCTTCGTGAGCTTCACACTCTTAAGGGACATGTTGAGTCTGTTGTGAAGCTGAAAGGTCTGGACATTGATACAATCCAGCAGCACTACACTGTGTGA 2112 0.4394 MIAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVDKDHVILLAARAARTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDADGNWHRASKGAPEQIMTLCNLRDDAKKKVHAIIDKFAERGLRSLAVARQEVPEKSKDSAGGPWQFVGLLSLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQDKDASIAALPIEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTVGCSLLSLIYAVSITIRIVFGFMFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLKEIFATGVVLGGYLALMTVIFFWAMKETTFFSDKFGVRSLHDSPDEMIAALYLQVSIVSQALIFVTRSRSWSYVERPGLLLMSAFVIAQLIATLIAVYANWGFARIKGIGWGWAGVIWLYSVVFYVPLDIMKFAIRYILSGKAWLNLLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPETSGIFNEKSSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV. 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03855 703 Gene3D - 652 703 - -
Seca6g03855 703 PRINTS P-type cation-transporting ATPase superfamily signature 332 351 - -
Seca6g03855 703 PRINTS P-type cation-transporting ATPase superfamily signature 73 87 - -
Seca6g03855 703 PRINTS P-type cation-transporting ATPase superfamily signature 227 238 - -
Seca6g03855 703 PRINTS P-type cation-transporting ATPase superfamily signature 355 367 - -
Seca6g03855 703 PRINTS P-type cation-transporting ATPase superfamily signature 249 259 - -
Seca6g03855 703 SUPERFAMILY Calcium ATPase, transmembrane domain M 5 599 IPR023298 -
Seca6g03855 703 SFLD Haloacid Dehalogenase 55 384 - -
Seca6g03855 703 Gene3D - 87 228 IPR023299 GO:0000166
Seca6g03855 703 Pfam haloacid dehalogenase-like hydrolase 69 346 - -
Seca6g03855 703 Gene3D - 229 301 IPR023214 -
Seca6g03855 703 PANTHER CALCIUM-TRANSPORTING ATPASE 1 635 - -
Seca6g03855 703 NCBIfam HAD-IC family P-type ATPase 307 419 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca6g03855 703 Coils Coil 654 674 - -
Seca6g03855 703 ProSitePatterns E1-E2 ATPases phosphorylation site. 75 81 IPR018303 -
Seca6g03855 703 FunFam Plasma membrane ATPase 85 232 - -
Seca6g03855 703 FunFam Plasma membrane ATPase 224 380 - -
Seca6g03855 703 SUPERFAMILY HAD-like 69 379 IPR036412 -
Seca6g03855 703 SFLD p-type atpase 55 384 IPR044492 -
Seca6g03855 703 FunFam ATPase 4 plasma membrane-type 317 567 - -
Seca6g03855 703 Gene3D - 1 86 - -
Seca6g03855 703 Gene3D - 333 598 - -
Seca6g03855 703 NCBIfam plasma-membrane proton-efflux P-type ATPase 2 558 IPR006534 GO:0008553|GO:0016020|GO:0120029
Seca6g03855 703 PRINTS H+-transporting ATPase (proton pump) signature 512 533 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca6g03855 703 PRINTS H+-transporting ATPase (proton pump) signature 332 348 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca6g03855 703 PRINTS H+-transporting ATPase (proton pump) signature 189 207 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca6g03855 703 PRINTS H+-transporting ATPase (proton pump) signature 304 320 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca6g03855 703 PRINTS H+-transporting ATPase (proton pump) signature 363 388 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03855 Seca-Chr6 106105010 106108423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03855 8 703 Primary Pumps ATPases AT2G24520 84.770 0.0 1240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03855 K01535 - gmx:100804422 1298.88