Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03832 ATGACGTCTGCCCCAAGTTTCTCTGGTTCACCGTCTTGCGAAATCATGAATGTGTCATCAATTCCAGTTGCTGAAGGTGTAGAGAAATGGGTCAACGATATTCACAACAATATTGTGCAACATGGAAAAGAATGTGTTGTTGACTATGCACCACAATTGGGAATGGAGTTTGAATCAGAGGTTGTGGCCTATAAATTTTACAATGAGTATAGTAAGAGAGTTGGGTTTGGTATTCGTCGAGAATATGGAAATAAAAGCAAAAAAGACGGAATTTTGACTTCAAGAAGATTCTCATGCTTCAAGGAGGGTAAACGAAGCGTTGACAAACGTGACCACTTGACAAAAGAGCCTAGAGCAGAAACCAGAACAGGATGTGAAGCACGTATGGTTATTTCACTTGATCGGAAGATAGGGAAATACAAGGTTATTGACTTTGTAGCTCAACATAATCACCCTCTTCAATCTCCAGAATATGCCTATATGATTCGCTCTCATCGAAATATTTCTGAGTCACAAGCATCACAAATTGTATTGGCGGATGAATCTGGGTTAAAACCAAAAGATTTTCATGAATATGTGTCCAAGCAAGTTGGTGGAATAAACAATGTTGGTTATACAAGACAAGACCTCAAGAATTACCTTCGGACTAAAAGGAATCAGTCTTTAAGGTATGGTGAAGTTGGTGCATTGTTGATGTACTTCAAACAACGAAGTGAAAATCCTTCATTCTTTTATGACTTTCAAATGGATGTTGAAGAGCAAATAACAAATATATTTTGGGCAGATGCACAAATGATAAATGATTATGGATACTTTGGTGATGTCATCACTTTTGACACCACATACAAGACAAATAAGGATTACCGACCCCTAGGAGTATTTGTTGGGCTTAATAATCATAGGCAAACAATTGTTTTTGGGGCAACATTGCTATATGATGAAACCATCCCTTCTTTTCAATGGTTATTTGAAACTTTCCTCAAAGCAATGGGTGGAGAAAAGCCTAAAACAATTCTAACAGATCAAGATGCAGCAATGGCAAAGGCTATTTCTTTAGTTATGCCAGAAACATTTCATGGATTATGCACTTGGCATATTAGAGAAAATGCCCTAAGACATGTGAACCATCTTTATCAAAAGAGTTCACAATTTTGCTCAGATTTTGAAGCATGCATTGATCTACATGAGGAGGAAGGTGAATTTCTGAATGCATGGAATGATTTACTTGTTGATCATAATGTTTCCGATGACTCATGGCTACATGGGATTTTTCGAGTGAAGGAAAAGTGGGCATGGGCTTATGTTCGAAAAACTTTCACGGCAGGTATGAGATCAACTCAATTAAGTGAGAGCTTTAATGCTGATCTGAAAAACCATTTGAAGTCAGATTTAAATTTGGTACAATTTTTCACACACTTTGAAAGAGTTGTAAATGGAAAAAGGAACAATGAGTCAGAAGCCGAATATGAGTCAAGACATAAGCTTCCTAGATTGAAAATGAAGAAGGCCCCTATGCTTGTGCAAGCTGGAAACATTTACACTCCAAAGCTTTTTCAGGAGTTCCAAGAGGAATATGAGGAATTTCAAGGCACTTGCATAAAGGAATTGAAAGAAGGGTTCTATATTGTTACAAATTATGATAACATTAAGGAACGGATAGTAGTGGGGAATGTGGTGGATCAAAAGGTTACATGTGATTGTCGGAAATTTGAGACTCATGGTATCTTATGCAGTCATGCTTTGAAAGTTTTGGATGTGATGAATATCAAGTTAATTCCTCAGCACTATATACTAAAGCGATGGACAAGAGATGCAAGGTTGGGAAGTAACCGAGATTGGAAAGGACAACATATTGAGTTGGACATAAAAGCCCATTTCACGAAGAGATATAATGCGTTATGTCCTCGAATGATTAAATTGACAGATAGAGCATCTAAATCTCATGAAACATATACCTTTTTGTCCAAAGTTTGTGAAGAGTCCAACAAAATAATTAATGTTATGTTGGCTGCAACATCTATGGGTGGAGAATCAATGGGAAAGTGTGATGTATCCATATCAATTGCAAATGAGAAAATTGACAACAATGTGAACAACATTGATTTTGGTGGGGCGAAAGGCATAAAGAAGCGAGATTCCTCACATAAGGGTAAAAAACGACCTAAATCTTGGGTTGAGAAGTTGGCTCGAAAAAGAAAGGCAAACCTAGCACAAAAAAAGAGAAAGACTCAAGAAAATTTGGAACAATTTGTAGCAACAAGTGATGGTATACATTCTTTTGATACAAGTCATACTTTTACTCAGTTGTTAACACAACCACTACACTGCATGCCAATTTCTCAAACTTCGGATCATATAAATGAGAGTGGTAGTCAATATGGAAGTGGGATCCAAGTTTTGAATGCAAGTCAACCTGAGAATGTAAGACTTTATCTGAATTTAAATGAAGCTGACAATGGAAATCAACATGGGAATACAATCCAAATGACACAATCAAGTCAAGTTCAAGGTGCATTAGACCTACACAACTTCATCTAG 2538 0.3696 MTSAPSFSGSPSCEIMNVSSIPVAEGVEKWVNDIHNNIVQHGKECVVDYAPQLGMEFESEVVAYKFYNEYSKRVGFGIRREYGNKSKKDGILTSRRFSCFKEGKRSVDKRDHLTKEPRAETRTGCEARMVISLDRKIGKYKVIDFVAQHNHPLQSPEYAYMIRSHRNISESQASQIVLADESGLKPKDFHEYVSKQVGGINNVGYTRQDLKNYLRTKRNQSLRYGEVGALLMYFKQRSENPSFFYDFQMDVEEQITNIFWADAQMINDYGYFGDVITFDTTYKTNKDYRPLGVFVGLNNHRQTIVFGATLLYDETIPSFQWLFETFLKAMGGEKPKTILTDQDAAMAKAISLVMPETFHGLCTWHIRENALRHVNHLYQKSSQFCSDFEACIDLHEEEGEFLNAWNDLLVDHNVSDDSWLHGIFRVKEKWAWAYVRKTFTAGMRSTQLSESFNADLKNHLKSDLNLVQFFTHFERVVNGKRNNESEAEYESRHKLPRLKMKKAPMLVQAGNIYTPKLFQEFQEEYEEFQGTCIKELKEGFYIVTNYDNIKERIVVGNVVDQKVTCDCRKFETHGILCSHALKVLDVMNIKLIPQHYILKRWTRDARLGSNRDWKGQHIELDIKAHFTKRYNALCPRMIKLTDRASKSHETYTFLSKVCEESNKIINVMLAATSMGGESMGKCDVSISIANEKIDNNVNNIDFGGAKGIKKRDSSHKGKKRPKSWVEKLARKRKANLAQKKRKTQENLEQFVATSDGIHSFDTSHTFTQLLTQPLHCMPISQTSDHINESGSQYGSGIQVLNASQPENVRLYLNLNEADNGNQHGNTIQMTQSSQVQGALDLHNFI. 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03832 845 Pfam FAR1 DNA-binding domain 65 154 IPR004330 -
Seca6g03832 845 Pfam SWIM zinc finger 561 585 IPR007527 GO:0008270
Seca6g03832 845 Coils Coil 733 753 - -
Seca6g03832 845 ProSiteProfiles WRKY domain profile. 80 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca6g03832 845 ProSiteProfiles Zinc finger SWIM-type profile. 540 588 IPR007527 GO:0008270
Seca6g03832 845 SMART 26again6 563 590 IPR006564 GO:0008270
Seca6g03832 845 Pfam MULE transposase domain 275 369 IPR018289 -
Seca6g03832 845 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 43 663 IPR031052 GO:0006355
Seca6g03832 845 MobiDBLite consensus disorder prediction 704 723 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03832 Seca-Chr6 105820817 105824452 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca6g03832 MULE 1.1e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03832 - - tpra:123895462 1139.02