Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03830 ATGCTTCTGGGGATGATGTTTGACAGTGGGACATACAAGAAACTGTATAGCTATCGACATCTTATAAATGGGTTTGCTGTTCATCTTTCACCAGAGCAGGCAGAAACTCTTAGACATGCTCCTGGTGTGAAATCTGTTGAGAGGGACTGGAAAGTGAGGAGACTTACAACACATACCCCACAGTTTTTGGGGCTTCCAACTGGTGTATGGCCAACAGGAGGTGGTTATGATCGGGCTGGAGAAGACATTGTGATTGGATTTGTGGACTCTGGGATCTATCCTCACCACCCAAGCTTTTCGACTCATAATACAGAACCATATGGGCCAGTTCAAAAATATAGAGGAAAATGTGAAGTTGATCCTGACACTAAAAGAAGTTTCTGTAATGGGAAGATTATTGGAGCACAACATTTTGCTCAAGCTGCAATAGCTGCTGGGGCATTTAACCCTTCAATTGATTTTGCATCTCCTCTAGATGGGGATGGCCATGGAAGTCATACAGCCTCTATTGCAGCTGGAAGAAATGGAATTCCTGTGAGGATGCATGGACATGAATTTGGGAAAGCAAGTGGAATGGCTCCCCGTGCCAGGATTGCTGTGTACAAAGCACTCTATAGACTGTTTGGAGGATTTATTGCAGATGTAGTTGCTGCACTTGATCAGGCTGTACATGATGGGGTGGATATACTCAGCCTTTCAGTTGGACCAAACAGTCCACCAGCAACCACCAAAACCACGTTTTTGAATCCTTTTGATGCTACATTACTTGGAGCCGTGAAAGCTGGTGTATTTGTTGCACAAGCTGCTGGAAATGGTGGTCCTTTTCCTAAGACATTAGTTTCATATAGTCCATGGATAGCATCTGTAGCAGCTGCAATTGATGATCGTAGATATAAAAACCATCTGATCCTTGGAAATGGGAAAATCTTAGCAGGAATTGGGTTGTCACGTGAGTTTTCCAACTTCCTACTATGTTTCTTTGGATGTAATATTTATTCTTAA 1002 0.4301 MLLGMMFDSGTYKKLYSYRHLINGFAVHLSPEQAETLRHAPGVKSVERDWKVRRLTTHTPQFLGLPTGVWPTGGGYDRAGEDIVIGFVDSGIYPHHPSFSTHNTEPYGPVQKYRGKCEVDPDTKRSFCNGKIIGAQHFAQAAIAAGAFNPSIDFASPLDGDGHGSHTASIAAGRNGIPVRMHGHEFGKASGMAPRARIAVYKALYRLFGGFIADVVAALDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDATLLGAVKAGVFVAQAAGNGGPFPKTLVSYSPWIASVAAAIDDRRYKNHLILGNGKILAGIGLSREFSNFLLCFFGCNIYS. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03830 333 Gene3D Peptidase S8/S53 domain 82 294 IPR036852 GO:0004252|GO:0006508
Seca6g03830 333 SUPERFAMILY Subtilisin-like 55 315 IPR036852 GO:0004252|GO:0006508
Seca6g03830 333 CDD Peptidases_S8_3 56 291 IPR034197 -
Seca6g03830 333 Pfam Subtilase family 80 274 IPR000209 GO:0006508|GO:0008236
Seca6g03830 333 ProSiteProfiles Serine proteases, subtilase domain profile. 49 333 - -
Seca6g03830 333 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 7 54 IPR037045 -
Seca6g03830 333 Gene3D - 295 317 - -
Seca6g03830 333 Pfam Peptidase inhibitor I9 8 53 IPR010259 -
Seca6g03830 333 SUPERFAMILY Protease propeptides/inhibitors 13 53 - -
Seca6g03830 333 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 14 314 IPR045051 -
Seca6g03830 333 PRINTS Subtilisin serine protease family (S8) signature 80 99 IPR015500 -
Seca6g03830 333 PRINTS Subtilisin serine protease family (S8) signature 159 172 IPR015500 -
Seca6g03830 333 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 85 96 IPR023827 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03830 Seca-Chr6 105810008 105812043 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03830 1 316 Subtilisin-like Serine Gene Family AT4G30020 87.382 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03830 - - gmx:100784999 611.298