LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca6g03827	ATGGTAAAGGAGGAAGAGAAGAAAATTGTGCTGACTAAGCCACTGGCAATAGAAAAAGAAAAGGAATCTGATTCAGAGGCGGGTTATAGAGCCCCTAATCTTTTGCAACGCATATTGAGTTTATTCAAGAATGTACGCCCAGGCTCTGATCTCACGCGCTTCCAGCTTCCACCACTGTTTAACTTACCAAAGTCACAACTTCAGTGCTATGGTGAATCAATATACTGCACAGCTTCGGACTTGTTGAGCATGTGCAACAGAGGGCAGAGTCCCCTAGATAGGTTTATATCTGTGGTAGCATGGTGCATATCTACCACACGCCCTGCAACTTTTGGTGTTGCCCCTTATAATCCCATTCTTGGTGAGACACACCATGTTTCAAAGGGAAATCTTAACGTCTTACTTGAACAGATTTCACACCACCCTCCAGTAACTGCCCTTCATGCAACAGATGAGAAGGAAAACATAGAGATGATATGGTGTCAGCAACCAGTTCCAAAGTTTAATGGCGCATCAGTTGAAGCTCAAGTTCTTGGTAAACGGCAGCTGAAGCTCCTAAATCATGATGAAACATATGAAATGAATTGTCCTCACCTTTTATTTAGAATTCTTCCTGTTCCTTCGGTTGATTGGGTTGGCACAGTTACTATACGGTGCCTAGAGACAGGACTAGTAGCTGAGTTATCCTACAGATCAAGTCATTCTTTTCTAGGAGTTGGTGGAAATCATAAAGTGATCAAAGGGAAGATCATTGACTCTTCATCTTTGGAAGTTCTATATGAAGTTGATGGTCATTGGGATAGGTCTGTAAAACTGAAGGATACAAAAAATGGGAAAGTCAGAGTGATATATGATGCAAAAGAAGTCATTTCAGGGCTCCAAGCTCCTATTGTCACGGATGCAGAGAGTGTGTGGCCAACAGAATCAGCCCATGTTTGGGGTGAATTGAGCGAAGCCATTCTAAGCAAAGATTGGGATAAAGCAAGAGAAGCAAAGCAAGCAGTGGAGGAAAAACAGAGGAAGCTGGTGAGAGAAAGAGAGTCAAAAGGGGAAACTTGGAGTCCTAAACATTTTATCACATCTTACAGCAAAGAAGCAGGGTGGGACTGTTCACCTATTCAAAACTGGATCACAAATATTGTCCTGACGAAGCCATTCTCGTTAGGAAGCGAATCAGATTCAAAATCAGAGGCGGTTTATAATGCTCCAAATCTTTTGCAGCGCCTGCCACCTTTATTCAATTTCCCAAAGTCACAACTTCAGTGCTATGGTGAATCTGTATATTCCACAGCTTCAAACTTGCTAAGCAGTTGCAACACTAGTCAGAGCCCACTTGACAGACTTATATCTGTTGTAGCATGGAGCATATCTACCACACGCCCAGCAATTTTTGGAGTTGCTCCCTACAATCCCATTCTTGGAGAAACCCATCATGTTTCCAAGGGAAATCTCAACGTCTTATTAGAGCAGGTTTCACACCACCCTCCTGTATCTGCCCTCCATGCAACTGATGAGAAAGAAAACATAGAAATGATATGGTGCCAGTATCCTGTTCCAAAAATTCTTCCAGTCCCTGGAATTGATTGGGTTGGCAATGTCAATATCAGGTGCCTAGAAACAGGTCTTGTGGCTGAGTTATGCTATACACGTCAATCTTTCTTTGGATTTGGGGGAAATGGAAGATTGATAAAGGGGAAGATCATTGATTCATCATCATTGAAGATTCTTTATGAAGTTAATGGTCACTGGGATAGTACTGTAACACTGAAGGATACAAATAATGCAGAAGAAAGAGTGATATACAATGCAAAAGAAGTCATTTCAGGGCTCCAAGCTCCTATTGTCAAGGATGCACAGTGTGTGTGGCCAACTGAATCAGCTCTTATTTGGAGTGAGTTGAGCCAAGCCATCCTGAACAAAGACTGGGAAAAAGCAAGAGAAGCAAAGAAAGCTGTGGAGGAAAGACAGAGGGAGCTTTTGAGAGAAAGAGAGACAAAAGGAGAAACTTGGGTCCCTAAACATTTCACACTGTCTCAAACCAAAGAAGGGGATTGGGACTGTTTACCCATTCAAAAGTGGGTCCCATCTGCTCCTATCATGACCTTATAA	2109	0.4244	MVKEEEKKIVLTKPLAIEKEKESDSEAGYRAPNLLQRILSLFKNVRPGSDLTRFQLPPLFNLPKSQLQCYGESIYCTASDLLSMCNRGQSPLDRFISVVAWCISTTRPATFGVAPYNPILGETHHVSKGNLNVLLEQISHHPPVTALHATDEKENIEMIWCQQPVPKFNGASVEAQVLGKRQLKLLNHDETYEMNCPHLLFRILPVPSVDWVGTVTIRCLETGLVAELSYRSSHSFLGVGGNHKVIKGKIIDSSSLEVLYEVDGHWDRSVKLKDTKNGKVRVIYDAKEVISGLQAPIVTDAESVWPTESAHVWGELSEAILSKDWDKAREAKQAVEEKQRKLVRERESKGETWSPKHFITSYSKEAGWDCSPIQNWITNIVLTKPFSLGSESDSKSEAVYNAPNLLQRLPPLFNFPKSQLQCYGESVYSTASNLLSSCNTSQSPLDRLISVVAWSISTTRPAIFGVAPYNPILGETHHVSKGNLNVLLEQVSHHPPVSALHATDEKENIEMIWCQYPVPKILPVPGIDWVGNVNIRCLETGLVAELCYTRQSFFGFGGNGRLIKGKIIDSSSLKILYEVNGHWDSTVTLKDTNNAEERVIYNAKEVISGLQAPIVKDAQCVWPTESALIWSELSQAILNKDWEKAREAKKAVEERQRELLRERETKGETWVPKHFTLSQTKEGDWDCLPIQKWVPSAPIMTL.	703

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca6g03827	702	Coils	Coil	642	665	-	-
	Seca6g03827	702	Gene3D	-	305	399	-	-
	Seca6g03827	702	Gene3D	-	622	692	-	-
	Seca6g03827	702	PANTHER	OXYSTEROL-BINDING PROTEIN-RELATED	38	361	IPR000648	GO:0008289
	Seca6g03827	702	FunFam	Oxysterol-binding protein-related protein 4B	622	694	-	-
	Seca6g03827	702	ProSitePatterns	Oxysterol-binding protein family signature.	489	499	IPR018494	-
	Seca6g03827	702	SUPERFAMILY	Oxysterol-binding protein-like	409	687	IPR037239	-
	Seca6g03827	702	Gene3D	-	521	611	-	-
	Seca6g03827	702	Gene3D	-	120	294	-	-
	Seca6g03827	702	Gene3D	-	473	520	-	-
	Seca6g03827	702	Pfam	Oxysterol-binding protein	409	506	IPR000648	GO:0008289
	Seca6g03827	702	Pfam	Oxysterol-binding protein	526	685	IPR000648	GO:0008289
	Seca6g03827	702	Pfam	Oxysterol-binding protein	41	313	IPR000648	GO:0008289
	Seca6g03827	702	Coils	Coil	328	348	-	-
	Seca6g03827	702	SUPERFAMILY	Oxysterol-binding protein-like	36	370	IPR037239	-
	Seca6g03827	702	FunFam	Oxysterol-binding protein-related protein 4B	305	377	-	-
	Seca6g03827	702	ProSitePatterns	Oxysterol-binding protein family signature.	136	146	IPR018494	-
	Seca6g03827	702	FunFam	Oxysterol-binding protein-related protein 4C	119	297	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca6g03827	Seca-Chr6	105780436	105794838	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca6g03827	K22285		-	gmx:100813724	630.943

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca6g03827	6	105780436	105794838	Seca6g03827	6	105780436	105794838	ECH
	Seca12g00751	12	6858565	6873034	Seca6g03827	6	105780436	105794838	PCT