Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03815 ATGCGGGATACTGAGAAGTTAAATAACAGAGGATCTACAAAATCATGTAACTCAAAGGAACATACAGAGTCAAAGATAGATTCAGTGAAATACAAAACAAGTAGCACAAAATGCCGAGGTAAGAAACACAAATTGAAATCAAAATCTCATGAACTCAGAGGTTGCACAAATGCATCAGGGAATACAGTTATGGATTCTTCTATCAAGATACAGGGAGGAAAATTTTCTCTTAGTTCTAGGAAAGCAGGGAAAGATGATGACGGGGAGGCAAAGATTCAAAAACGTAAGAGAAAGAGAAAGAAGAAAAGACAAAGGGATAATGTGAATCTTGATGATACTGCACGCCTGCTGAGAAGAACAAGGTATCTCTTAATCAAGATGAAGCTAGAGCAGAATCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAAAGTCGAGAGAAGATTAGGCCAGAAAGGGAGCTACAAAGAGCAAAGAAGCAGATTTTAAAATGTAAACTTAGTATCCGTGATGCCATTCGCCAGCTGGATTCTCTTAGTTCAGTGGGTAGCATTGAAGAATCTGTTATTGCTCCAGATGGATCTGTTTATCATGAACATATATTCTGTGCAAATTGCAAGTTGCGCGAAGCTTTCCCAGATAATGACATTATACTCTGTGATGGCACATGCAATCGTGCTTTTCACCAAAGATGTCTTGATCCTCCTTTGGATACTGAAAATATTCCTCCTGGAGACCAAGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATAGAAATACTGGAGGCAACAAATGCTCATCTTGGAACTCAATTCTCCCTGGACAGTACTTGGCAGGATGTATTCAATGAAGAGGCTGCTATACCTGATGGTGATGCTGGGTTACTAAATCCAGAAGAAGAATGGCCATCAGATGATCCAGAAGATGATGACTATAATCCAGAGAGAAAAGAAGACAGCCATAGCATCAAGACAGAAGGAACTGATGATAGTGTATCTGATGATTTAAGCAGTTCTTCCAATTTGTGTTCTTTGAATGGTGATGAAGGCATCAGCCTTGAATATTATTCTGTTAATAGCTACATAGATTCTGATGAGTCTGGGGGAATAGCATGTGGCCGTAGGCAGCGTAAAGCTGTTGACTACAAGAAACTTTATGATGAAATGTTTGGGAAGGATGCTCCTCCATGTGAACAAGTGAGTGAAGATGAGGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTCTGATGCTGTTAATACTCTTATGACTCTACATGCAAGTGAGAATAAACATCCCAATAATGAGAACAATGATAGAATAAAAGAGGGTTCTTCAGGCATAAGAATAAGAAGGCCTTGTTTCAGGATTCCACATGACGCAGTTGAGAAGCTACGCCAAGTTTTTGCAGAGAATGAGCTTCCTTCAAGATCTGTGAGGGAAGGTCTTTCAAAAGAGCTGGGACTTGATTCTGTGAAGGTTAGCAAATGGTTCAAAAATGCACGTTACATGGCACTTAAAACTAGAAAGTGTCAAGCAGAAGGAGGACAACAGCTTCAGAGTCTCACTTCTAAGACTTCAAAGGATTCTGGATCACAAAATGTGGAGAAAGATGAGCTTTTGAAATCAAAGGCCTCTAAAACTACCGTGATTCATTCCCAGAAGAATGGTAAAAATGTCACTGGCAAAGAGAAAATAAAGTCATCTAGCAGTCCTTTGAAGGAAAGGCAACCAGAAATATCTGCACCCTTAAGAGAAAATGGCAACAAGGACTCCATGGAGGTCAGTTATGATGTTAGCTTGAAGAAACTGTTGAAAGAAAAGAAAAGGAGGGTAACTTTTATATTTGAAGGAGACTCTGAGGCAGCAGAGTTGGAATTTGAAAGACTCAGCAAAGTGAAGATGAAACTAGATAGTATGAAGCAAAAATTAACTGAAGTTCAAAATTACAGAGCAAAGGATTCAAATGAACCGTCTATTATATATGTACCTACAGCTGAGTTGAGGGAAAAGGTTGAATAA 2031 0.3939 MRDTEKLNNRGSTKSCNSKEHTESKIDSVKYKTSSTKCRGKKHKLKSKSHELRGCTNASGNTVMDSSIKIQGGKFSLSSRKAGKDDDGEAKIQKRKRKRKKKRQRDNVNLDDTARLLRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPERELQRAKKQILKCKLSIRDAIRQLDSLSSVGSIEESVIAPDGSVYHEHIFCANCKLREAFPDNDIILCDGTCNRAFHQRCLDPPLDTENIPPGDQGWFCKFCECKIEILEATNAHLGTQFSLDSTWQDVFNEEAAIPDGDAGLLNPEEEWPSDDPEDDDYNPERKEDSHSIKTEGTDDSVSDDLSSSSNLCSLNGDEGISLEYYSVNSYIDSDESGGIACGRRQRKAVDYKKLYDEMFGKDAPPCEQVSEDEDWGPGKRKRREKESDAVNTLMTLHASENKHPNNENNDRIKEGSSGIRIRRPCFRIPHDAVEKLRQVFAENELPSRSVREGLSKELGLDSVKVSKWFKNARYMALKTRKCQAEGGQQLQSLTSKTSKDSGSQNVEKDELLKSKASKTTVIHSQKNGKNVTGKEKIKSSSSPLKERQPEISAPLRENGNKDSMEVSYDVSLKKLLKEKKRRVTFIFEGDSEAAELEFERLSKVKMKLDSMKQKLTEVQNYRAKDSNEPSIIYVPTAELREKVE. 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03815 676 SUPERFAMILY FYVE/PHD zinc finger 195 260 IPR011011 -
Seca6g03815 676 Pfam PHD-finger 203 258 IPR019787 -
Seca6g03815 676 SMART PHD_3 203 256 IPR001965 -
Seca6g03815 676 MobiDBLite consensus disorder prediction 516 533 - -
Seca6g03815 676 ProSitePatterns Zinc finger PHD-type signature. 204 255 IPR019786 -
Seca6g03815 676 ProSiteProfiles 'Homeobox' domain profile. 451 511 IPR001356 GO:0003677
Seca6g03815 676 Gene3D - 451 515 - -
Seca6g03815 676 MobiDBLite consensus disorder prediction 534 548 - -
Seca6g03815 676 MobiDBLite consensus disorder prediction 52 74 - -
Seca6g03815 676 MobiDBLite consensus disorder prediction 35 49 - -
Seca6g03815 676 ProSiteProfiles Zinc finger PHD-type profile. 201 258 IPR019787 -
Seca6g03815 676 MobiDBLite consensus disorder prediction 1 107 - -
Seca6g03815 676 SMART HOX_1 453 515 IPR001356 GO:0003677
Seca6g03815 676 CDD homeodomain 452 506 IPR001356 GO:0003677
Seca6g03815 676 MobiDBLite consensus disorder prediction 513 596 - -
Seca6g03815 676 MobiDBLite consensus disorder prediction 561 575 - -
Seca6g03815 676 Pfam Homeodomain 462 506 IPR001356 GO:0003677
Seca6g03815 676 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 252 IPR013083 -
Seca6g03815 676 SUPERFAMILY Homeodomain-like 450 511 IPR009057 -
Seca6g03815 676 MobiDBLite consensus disorder prediction 16 34 - -
Seca6g03815 676 MobiDBLite consensus disorder prediction 300 314 - -
Seca6g03815 676 FunFam pathogenesis-related homeodomain protein 453 517 - -
Seca6g03815 676 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 14 674 - -
Seca6g03815 676 CDD PHD_PRHA_like 203 255 IPR045876 -
Seca6g03815 676 MobiDBLite consensus disorder prediction 290 342 - -
Seca6g03815 676 MobiDBLite consensus disorder prediction 392 420 - -
Seca6g03815 676 MobiDBLite consensus disorder prediction 79 93 - -
Seca6g03815 676 MobiDBLite consensus disorder prediction 315 332 - -
Seca6g03815 676 FunFam pathogenesis-related homeodomain protein-like 195 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03815 Seca-Chr6 105640064 105648960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03815 103 516 Homeobox Transcription Factor Family AT4G29940 57.746 8.11e-160 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Seca6g03815 Homeodomain 4.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03815 - - gmx:100787118 991.49