Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03811 ATGGAGAATATTGGTGACGAATACAAACATTACTGGGAAACCAACATGTTCCTCCAAACCCAAGAGATTGACAGCTGGGGATTAGATGAGGCGTTATCAGGGTACTATGATTCAAGCTCCCCAGACGGTGCTGCTTCCTCTGCAGCGTCCAAGAACATTATGTCAGAGAGGAATAGGAGGAAGAAGCTCAATGAAAGGCTCTTTGCCCTTAGATCAGTGGTCCCCAACATTAGCAAGATGGATAAGGCATCGATTATTAAGGATGCTATTGAGTACATACAGCACTTGCATGAGCAAGAGAAGATGATCCAAGCTGAGATAATGGAGCTTGAATCTGGGATGCCAAAGAATAATAATCCAAGTTATGACTTTGAGCAGGACCTTCCTGTGCTTCTGAGGTCCAAGAAGAAGAGAACAGAGCACCTATATGATTCTGTCACTTCAAGAAACTCCCCAATTGAAGTCCTTGAGCTGCGGGTAACATACATGGGAGAGAAGACTGTTGTGGTGAGTTTGACATGTAGCAAAAGAACAGACACAATGGTGAAACTGTGCGAAGTGTTTGAATCTTTGAAGCTCAAGATAATTACTGCAAATATCACTTCATTTTCAGGCAGGCTTTTGAAGACAGTCTTCATTGAGGCAAATGAAGAAGAGAAAGATCTTTTGCAGATAAAGATCCAAACGGCAATTGCAGCTCTTAATGATCCTCTAAGCCCTATGAGCATCTGA 732 0.4262 MENIGDEYKHYWETNMFLQTQEIDSWGLDEALSGYYDSSSPDGAASSAASKNIMSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIEYIQHLHEQEKMIQAEIMELESGMPKNNNPSYDFEQDLPVLLRSKKKRTEHLYDSVTSRNSPIEVLELRVTYMGEKTVVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGRLLKTVFIEANEEEKDLLQIKIQTAIAALNDPLSPMSI. 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03811 243 Gene3D - 44 113 IPR036638 GO:0046983
Seca6g03811 243 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 43 113 - -
Seca6g03811 243 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 46 228 - -
Seca6g03811 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 113 IPR036638 GO:0046983
Seca6g03811 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Seca6g03811 243 Pfam Helix-loop-helix DNA-binding domain 52 97 IPR011598 GO:0046983
Seca6g03811 243 SMART finulus 53 102 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03811 Seca-Chr6 105581944 105588318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03811 1 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 65.899 2.63e-90 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca6g03811 HLH 1.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03811 - - gmx:100817978 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03811 6 105581944 105588318 Seca6g03811 6 105581944 105588318 ECH
Seca12g00738 12 6775007 6779205 Seca6g03811 6 105581944 105588318 PCT