Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03800 ATGGTATATCCAGGGAGTAATACTGTTTTTTTATTCTTTCGGCTGCAGATCTTTAATGGCGTCTTTCTCAAAGTCAACAAAGCAACCATGAATATGCTACACAGGGTAGAGCCTTACGTCACCTATGGTTACCCTAATTTGAAGAGTGTCAGAGAGTTGATCTACAAAAGGGGCTACGGAAAAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGACTCTGGGGAAGCTTGGTATTATCTGCATTGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAGGGAGGCAAATAACTTCCTCTGGCCTTTCAAGCTCAAAGCTCCCCTGGGAGGTTTGGAGAAGAAAAGAAATCACTATGTTGAAGGAGGTGATGCTGGCAATAGGGAAGATTACATAAATGAGCTTATTAGAAGGATGAATTAG 447 0.4116 MVYPGSNTVFLFFRLQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKVNKQRIALTDNSIIEQTLGKLGIICIEDLIHEIMTVGPHFREANNFLWPFKLKAPLGGLEKKRNHYVEGGDAGNREDYINELIRRMN. 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03800 148 CDD Ribosomal_L7_archeal_euk 13 148 IPR035808 -
Seca6g03800 148 FunFam 60S ribosomal protein L7 94 148 - -
Seca6g03800 148 PANTHER 60S RIBOSOMAL PROTEIN L7 14 148 IPR039699 -
Seca6g03800 148 FunFam 60S ribosomal protein L7 1 93 - -
Seca6g03800 148 Pfam Ribosomal protein L30p/L7e 16 40 IPR016082 -
Seca6g03800 148 SUPERFAMILY Ribosomal protein L30p/L7e 16 148 IPR036919 -
Seca6g03800 148 Gene3D - 94 148 IPR036919 -
Seca6g03800 148 Gene3D - 7 93 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03800 Seca-Chr6 105415753 105417291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03800 4 148 Cytoplasmic Ribosomal Protein Gene Family AT2G44120 82.192 3.75e-89 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03800 K02937 - mof:131152931 272.707