Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03799 ATGGCCAAAGAGGAAGCGAAAGCGGTGGTTCCTGAATCTGTATTGAAGAAGCAGAAAAGGAACGAGGAGTGGGCTTTGGCTAAAAAGCAGGAGCTGGAAGCCGCGAAGAAGAAAAGGTCTGAAACTCGGAAACTGATTTGGAGCAGAGCCAAACAGTACTCAAAGGAATACGATGACCAGCAAAAGGAGCTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGCGGGTTTTATGTCGACCCCGAAGCTAAGCTCTTGTTTATCATCAGGATCCGTGGTATCAATGCCATGCATCCAAAAACAAGGAAGATTTTGCAGCTTCTGCGTTTGAGACAGGTAAACTTCAAATACAAATTGAGATTTTTTTTATTAGTCACTTACTGA 384 0.4401 MAKEEAKAVVPESVLKKQKRNEEWALAKKQELEAAKKKRSETRKLIWSRAKQYSKEYDDQQKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMHPKTRKILQLLRLRQVNFKYKLRFFLLVTY. 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03799 127 PANTHER 60S RIBOSOMAL PROTEIN L7 8 114 IPR039699 -
Seca6g03799 127 Pfam Ribosomal protein L30p/L7e 86 114 IPR016082 -
Seca6g03799 127 SUPERFAMILY Ribosomal protein L30p/L7e 85 114 IPR036919 -
Seca6g03799 127 Pfam Ribosomal L30 N-terminal domain 10 81 IPR012988 -
Seca6g03799 127 Coils Coil 50 70 - -
Seca6g03799 127 Gene3D - 85 119 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03799 Seca-Chr6 105414400 105415157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03799 1 113 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 79.646 2.86e-58 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03799 K02937 - gmx:100306213 184.882