Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03789 ATGGCACTGGATACCTTAGGTGTTCCCAGGATCAGGATGCAACAAGGTCAAAAGCACATGGCCATACAAGAAGCTGCTTCAGCTGGGTTAAAGAGCATGGAGCATCTCATTCGAATCCTTTCATCTCAGTCCCCTTCTTCTTCTTCTTCTTCTTCTTCTGCGCACAACAACAACAACCTCAACTGCTCCGAAATCACCGACTTCACTGTCTCCAAGTTCAAGCAAGTAATCAACCTCTTGAACCGCACCGGCCACGCCCGCTTTCGCCGCGCACCACCCCAACCCCAACCTCAGGCCCAGGCCCAGGCCCAGGCCCAGCCACAACAATCACCACCTCAGACCCCTGGTTTGACTCTAGATTTCGCCAAATCCACCATCCTCAACTCTAAGCCCAAAACCATGGACGAAACTCTCACCTTGTCCACCACCACCAACTCTTCCTTCATGTCCTCCATCACCGACGATGGCAGCGTCTCCGACGGCAAGGTAGGCCCCTTCTTGGTGCCCTCCGCCAAGCCCCCTCTATCCTCCTCTCATCGGAAAAGGTGTCACGAAGCCGCCCTCTCCTCTGGTCACTGCCATTGCTCCAAGAAAAGCAGGAAATCACGAGTGAAGCGAACAATCCGCGTGCCGGCGGTAAGCTCTAAAATCGCCGATATTCCAGCGGACGAGTACTCTTGGAGGAAGTACGGTCAAAAACCGATCAAGGGTTCACCCTACCCTCGTGGATACTATAAGTGCAGCACCGTGAGAGGGTGTCCTGCTAGGAAGCACGTGGAGCGAGCCCAAGACGATCCCAAGATGCTGATCGTGACGTACGAGGGCGAGCACCGTCACTCGCAACCGCAACCCACCGCAGGTTTCAACCTCCAAACGAATTGA 882 0.5465 MALDTLGVPRIRMQQGQKHMAIQEAASAGLKSMEHLIRILSSQSPSSSSSSSSAHNNNNLNCSEITDFTVSKFKQVINLLNRTGHARFRRAPPQPQPQAQAQAQAQPQQSPPQTPGLTLDFAKSTILNSKPKTMDETLTLSTTTNSSFMSSITDDGSVSDGKVGPFLVPSAKPPLSSSHRKRCHEAALSSGHCHCSKKSRKSRVKRTIRVPAVSSKIADIPADEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAQDDPKMLIVTYEGEHRHSQPQPTAGFNLQTN. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03789 293 Pfam Plant zinc cluster domain 180 219 IPR018872 -
Seca6g03789 293 Gene3D WRKY domain 206 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca6g03789 293 FunFam WRKY transcription factor 65 205 282 - -
Seca6g03789 293 SMART WRKY_cls 221 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca6g03789 293 Pfam WRKY DNA -binding domain 223 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca6g03789 293 MobiDBLite consensus disorder prediction 95 119 - -
Seca6g03789 293 SUPERFAMILY WRKY DNA-binding domain 219 282 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca6g03789 293 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 20 285 IPR044810 GO:0003700
Seca6g03789 293 MobiDBLite consensus disorder prediction 88 119 - -
Seca6g03789 293 ProSiteProfiles WRKY domain profile. 216 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03789 Seca-Chr6 105253674 105255074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03789 1 281 WRKY Transcription Factor Family AT2G24570 51.064 1.64e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca6g03789 WRKY 2.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03789 - - gmx:100127391 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03789 6 105253674 105255074 Seca6g03789 6 105253674 105255074 ECH
Seca12g00718 12 6570031 6571497 Seca6g03789 6 105253674 105255074 PCT