Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03784 ATGTTCTCTGCCATGGAAGATGATAAGGCATGCAACATGGGTCTAAGTCTCCATCTTGGATTGGGAGGGTATGTGCCAAAAAAAGAGAACCAAAAAGTAAACAAACCTGTGGCTAGCTCGGACCTAACGTTTGGGGAAGAAGCCATTGATAAGGCATCAAAAGGATTCATTTTGAAGGGAGTGCATGAACCCCCATATGAACAGAGTACTGAAATCACCAATAGGAAGAAACTGAGACTCACAAAGGAGCAACAAGCCATGCTTGAGGACAGTTTCCAGCTGCATAACACCATTAACCCCGCTCAGAAACGGGCACTTGCTGAGCAATTGAATTTAAAGCATAGACAGGTTGAAGTTTGGTTCCAGAACAGAAGAGCAAGGACCAAGCTGAAACAAACAGAGGTGGATTGTGAGTTTTTGAAGAAATGCTGTGAAAAACTAACAGAGGAGAACCTAAGGTTGAAGAAGGAATTGCAAGAGCTGCGTGCATTAAAAGTTGGACCATACTCGAAGGGTGCAAACTGGACCGTTTGTTCATCGTGTGAGAAACTATTGAAGCCTAATGAAGCCACCAATATTTCCAATGTGGTCCGAAACAACACCGCAAAATACTGCACATCAGCAACATAG 630 0.4349 MFSAMEDDKACNMGLSLHLGLGGYVPKKENQKVNKPVASSDLTFGEEAIDKASKGFILKGVHEPPYEQSTEITNRKKLRLTKEQQAMLEDSFQLHNTINPAQKRALAEQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTEENLRLKKELQELRALKVGPYSKGANWTVCSSCEKLLKPNEATNISNVVRNNTAKYCTSAT. 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03784 209 Coils Coil 130 164 - -
Seca6g03784 209 ProSitePatterns 'Homeobox' domain signature. 106 129 IPR017970 GO:0000981|GO:0006355
Seca6g03784 209 SMART halz 131 174 IPR003106 GO:0006355|GO:0043565
Seca6g03784 209 Gene3D - 81 127 - -
Seca6g03784 209 SMART HOX_1 73 135 IPR001356 GO:0003677
Seca6g03784 209 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 70 192 - -
Seca6g03784 209 CDD homeodomain 75 132 IPR001356 GO:0003677
Seca6g03784 209 Pfam Homeobox associated leucine zipper 131 164 IPR003106 GO:0006355|GO:0043565
Seca6g03784 209 SUPERFAMILY Homeodomain-like 73 139 IPR009057 -
Seca6g03784 209 ProSiteProfiles 'Homeobox' domain profile. 71 131 IPR001356 GO:0003677
Seca6g03784 209 Pfam Homeodomain 75 129 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03784 Seca-Chr6 105207910 105209319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03784 72 184 Homeobox Transcription Factor Family AT4G37790 69.231 5.53e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca6g03784 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03784 K09338 - gmx:100790522 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00709 12 6497630 6499011 Seca6g03784 6 105207910 105209319 PCT