Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03782 ATGGCTACTGCATTGACTGTGCCTAAACATGAACCAAAAACCTCGCTTTCCTCTCCAAGGTTACCTCGCAGAGTACTCCAAGCGGAAGCTCCTTTACCCTCTAATGATGAGTCCTCTTCCGGGCACAAACCTCAACCATGGTCCTTCATCCTTGGAGGGATACTAGTTGTGGCCATATTGTTGATTCTTTTCTTTATATATCGGAAACGTATCAAACGCCCAGCACACTCAAAAGAAAAAACACCTCCAACTATAGGGCACCAAGCGTTTGGGAAATATATTGAACCTGCAGAGGTGATAAAGATGGTATTTCCACCCAAACAACAACAACAGCCTCCAGAATTCTTTAGTGGGAACCTTCGAACAATTAGCTACTTTGACTACCAAACATTGAGGAAGGCAACCAAGAATTTTTGTCCTGAAAATCTTCTTGGAAGTGGTGGATTCGGGCCTGTCTACCAGGGAAAGTTGGTAGATGGAAGGATGATTGCTGTGAAGAAATTGTGTCACAACAAATCCCAACAGGGAGAAAGAGAATTTCTGGTAGAGGTGAAAACGATCACTAGTATCCAACACAAAAATCTGGTTCGCCTTATTGGATGTTGCATGGATGGACCTCAAAGGATACTTGTCTATGAATACATGAAGAACAGAAGTTTGGACCTCTTCATATATGGAAACAGTGATCAATTTCTGAATTGGAGCACTAGGTTCCAAATTATTCTTGGAGTAGCACGGGGACTGCAATACCTTCATGAGGATTCACACAAAAGAATTGTTCACCGAGATATCAAAGCAAGCAACATTCTTCTTGATGACAAGTTTCAGGCAAGGATTGGAGACTTTGGACTAGCTAGGTTCTTCCCTGAAGACCAAGCTTATCTTAGCACACAGTTTGCAGGAACATTAGGTTATACAGCTCCTGAATACGCTATTAGAGGAGAACTATCAGAAAAAGCGGATATCTATAGTTTCGGAGTTCTCTTGCTTGAAATAATCTGTTGCAGGAAAAACACAGATCATACTTTACCATCAGAAATGCAGTACCTCCCTGAATATGCATGGAAACTGTATGACTATGAGAAGTCAAGTATATTAGATATTGTGGATCCAAAGCTGCGAGAACATGGATTTGTAGAAAAGGATGTTATGCAAGCAATCCATGTGGCTTTCTTATGTCTTCAGCCTCATGCACATTTGAGACCCCCCATGTCAGCGATTGTGGCATTGTTGACATTCAAAATTGAATTGGTTACAACACCTATGAGGCCAGCCTTCTTCGATCGAAGGCGCAGAAAGGGTGAAGAGAACCATTCTTTTGAAGCAACATCCGAGGCTAATGATTGA 1347 0.4187 MATALTVPKHEPKTSLSSPRLPRRVLQAEAPLPSNDESSSGHKPQPWSFILGGILVVAILLILFFIYRKRIKRPAHSKEKTPPTIGHQAFGKYIEPAEVIKMVFPPKQQQQPPEFFSGNLRTISYFDYQTLRKATKNFCPENLLGSGGFGPVYQGKLVDGRMIAVKKLCHNKSQQGEREFLVEVKTITSIQHKNLVRLIGCCMDGPQRILVYEYMKNRSLDLFIYGNSDQFLNWSTRFQIILGVARGLQYLHEDSHKRIVHRDIKASNILLDDKFQARIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLLLEIICCRKNTDHTLPSEMQYLPEYAWKLYDYEKSSILDIVDPKLREHGFVEKDVMQAIHVAFLCLQPHAHLRPPMSAIVALLTFKIELVTTPMRPAFFDRRRRKGEENHSFEATSEAND. 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03782 448 Gene3D Phosphorylase Kinase; domain 1 108 214 - -
Seca6g03782 448 Gene3D Transferase(Phosphotransferase) domain 1 215 418 - -
Seca6g03782 448 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 27 440 - -
Seca6g03782 448 FunFam Cysteine-rich receptor-like protein kinase 10 103 214 - -
Seca6g03782 448 SMART serkin_6 138 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03782 448 MobiDBLite consensus disorder prediction 1 24 - -
Seca6g03782 448 SUPERFAMILY Protein kinase-like (PK-like) 124 429 IPR011009 -
Seca6g03782 448 Pfam Protein tyrosine and serine/threonine kinase 142 357 IPR001245 GO:0004672|GO:0006468
Seca6g03782 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Seca6g03782 448 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 215 421 - -
Seca6g03782 448 CDD STKc_IRAK 144 412 - -
Seca6g03782 448 ProSiteProfiles Protein kinase domain profile. 138 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03782 Seca-Chr6 105191992 105194726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03782 126 427 Receptor kinase-like Gene Family AT1G56120 47.682 4.60e-95 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca6g03782 PK_Tyr_Ser-Thr 2.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03782 - - gmx:100799624 662.914