Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03776 ATGTGTATGATTCCATTCCATTCCATGACACCAACTTATCGTTATTCAGTACTATCTTCTCCTATGCCGCCTTTAGATCTTAATGAAGAAGATCACACTCACCACCAGTTCTTCTGCAGTACAAATTACCATCAAGCCTCTTCTTCTCTATCATATTCTATACTCTTCAACCCCGACCAAGATCAAGGAGGAGGATCTTACTGTTGGGGACCAAAGCAGTTACAAAGTGATGAAGAGGCCGAGAAGATTGTTCCTTGTAGCGGATCATGGGATCATGGAGCAGTTGAAAAGAATGGAAACAGAAGTAGTGACCTGAAGAAAGAAGATGGTGGGAATGATCAAAATATTGAGGATATGAATTCAATGAAGTGGATGCCTTCAAAGATGAGAATCTTGCGGAGGATGATGCTATCAGATTCTAATGAAAACCAAAATTCATCATCACCTCCTCCTCTAGGAACTGGAATTCGAACAGCCACCAACAATATCAGTACAACTGTTAGGGTTTGTGCTGATTGCCACACCACTAAGACCCCTCTCTGGAGGACAGGACCAACAGGTCCCAAGCAGTCACTTTGCAACGCCTGTGGGATTAGACAAAGGAAAGCAAGACGTGCTGCTGCTGTTGCTGCAAATGGTACTATTGATCTGGTGAAGGAAAACAAGTTTGAAAGCAAAGGGAAGAAGAGGTCGAAAACTGATGAGTACTGTGAAGCAAAGTTGCAAAAGAAGCGTAAACTTGGAAGGAAGCTTAAGCCAAACAAGAATAAGTTTAGTTTTGAGGAATTGAGAATAAGGTTGAGTAACAAGTTGCCTCTCCATCAAGTTTTCCCTCAGGATGAGAAGGAGGCTGCCATTCTCCTCATGGCTTTGTCTCATGGCTAG 885 0.4271 MCMIPFHSMTPTYRYSVLSSPMPPLDLNEEDHTHHQFFCSTNYHQASSSLSYSILFNPDQDQGGGSYCWGPKQLQSDEEAEKIVPCSGSWDHGAVEKNGNRSSDLKKEDGGNDQNIEDMNSMKWMPSKMRILRRMMLSDSNENQNSSSPPPLGTGIRTATNNISTTVRVCADCHTTKTPLWRTGPTGPKQSLCNACGIRQRKARRAAAVAANGTIDLVKENKFESKGKKRSKTDEYCEAKLQKKRKLGRKLKPNKNKFSFEELRIRLSNKLPLHQVFPQDEKEAAILLMALSHG. 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03776 294 CDD ZnF_GATA 169 198 IPR000679 GO:0006355|GO:0043565
Seca6g03776 294 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 167 205 - -
Seca6g03776 294 MobiDBLite consensus disorder prediction 87 119 - -
Seca6g03776 294 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 9 294 - -
Seca6g03776 294 ProSitePatterns GATA-type zinc finger domain. 170 196 IPR000679 GO:0006355|GO:0043565
Seca6g03776 294 SMART GATA_3 164 216 IPR000679 GO:0006355|GO:0043565
Seca6g03776 294 Pfam GATA zinc finger 170 204 IPR000679 GO:0006355|GO:0043565
Seca6g03776 294 ProSiteProfiles GATA-type zinc finger domain profile. 164 201 IPR000679 GO:0006355|GO:0043565
Seca6g03776 294 MobiDBLite consensus disorder prediction 97 114 - -
Seca6g03776 294 Gene3D - 163 209 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03776 Seca-Chr6 105122541 105124099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03776 105 294 C2C2-Gata Transcription Factor Family AT4G26150 35.088 2.34e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca6g03776 GATA 7.1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03776 - - gmx:100792098 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00699 12 6405859 6407437 Seca6g03776 6 105122541 105124099 PCT