Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03764 ATGGGGTGCAACAAAGGGGAAATTGAGCTTGGTTTCTTAAACATGTCTCAAGCTGACATTCAAACAGCACTTAGAAGTTTGTTTCCTGAAGATTTTTCTAGACAATCCCAGAAAATTGATCAAAATCCACCTTCATCATCTTCATCTTCTTTGAGATCACTATCTACAGGTAGCCCTGAATATTCATCTCTGATATTTAATATTCCAGGCACTTCTCAATCTCACTTTCCTGAGACACTTGGAGTTGGAGGAGTGCCTCCAATGAGACCTGTGTCAAACACAGCTACAAGCCAAAACCAACAAGCCCTCCAACTCCAAGCATTGGCTCAAGTCACTCCAACTCCAAGTCAATTCCCCACACCAGAAACTGAACATGATGCAATAATGAGAGCAATCCTCAATGTTATATCTTCACCTTCTCATCAGCATCAAACCCAGCAAAACTGGCCTTATATGGTGCATCCAGAAGCTAGTGCTTTCATGAGGTATAGATCAGATAGAAGTTCCAATATGACACCCCAAATGGGGTCCAATTTCAGAAGGCAGAGCCTGATGAAGAGATCATTTGCATTCTTTAGAAACTTAAATTTTATGAGAATGAGAGAACGTATTCAAACAACACGTCCCTCTAGTACTCAGCTCCATCATATGATATCAGAAAGAAGAAGGCGTGAGAAACTAAATGAGAATTTCCAAGCACTTAGAGCATTACTTCCTCCAGGAACCAAGAAAGACAAAGCTTCCATACTGATAACTGCAAAGGAGACATTGAGCTCTTTGATGGCTGAAATTGACAAGCTAAGCAAAAGAAATCAGGAGTTGGTGTCACTTTTGCCAGCCAAAGAATCTACAACTGAAGAAAAAACCAAAGCTAGTAGCTTGTCATCAAATGAAAGATTAAATGTCCAAGTTTCACATGTACCAGAATCAAGCTCATCAGAAGAGCAAATGGTGGACTTGCAAGTGAATGTGAGAGGACAAATTTCTCAAGTTGATATATTGACCCGGTTATTGGAATTCTTAAAGCAGGTTCACCATGTGAGCTTGGTTTCCATGGGAGCAAACACACATACAGAAGGAGGGAATGCCCTTCATCAACTAACTTTCAGGCTAAGAATTATTCAGGTATTAATAAAAATAGTTCATGAAATAGCATGGAATAACTTGTTGTGA 1173 0.3973 MGCNKGEIELGFLNMSQADIQTALRSLFPEDFSRQSQKIDQNPPSSSSSSLRSLSTGSPEYSSLIFNIPGTSQSHFPETLGVGGVPPMRPVSNTATSQNQQALQLQALAQVTPTPSQFPTPETEHDAIMRAILNVISSPSHQHQTQQNWPYMVHPEASAFMRYRSDRSSNMTPQMGSNFRRQSLMKRSFAFFRNLNFMRMRERIQTTRPSSTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASILITAKETLSSLMAEIDKLSKRNQELVSLLPAKESTTEEKTKASSLSSNERLNVQVSHVPESSSSEEQMVDLQVNVRGQISQVDILTRLLEFLKQVHHVSLVSMGANTHTEGGNALHQLTFRLRIIQVLIKIVHEIAWNNLL. 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03764 390 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 23 374 IPR044658 -
Seca6g03764 390 Gene3D - 210 292 IPR036638 GO:0046983
Seca6g03764 390 Pfam Helix-loop-helix DNA-binding domain 215 260 IPR011598 GO:0046983
Seca6g03764 390 CDD bHLH_AtbHLH_like 216 268 IPR045239 -
Seca6g03764 390 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 211 276 IPR036638 GO:0046983
Seca6g03764 390 Coils Coil 250 277 - -
Seca6g03764 390 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 211 260 IPR011598 GO:0046983
Seca6g03764 390 MobiDBLite consensus disorder prediction 33 55 - -
Seca6g03764 390 Coils Coil 217 237 - -
Seca6g03764 390 SMART finulus 217 266 IPR011598 GO:0046983
Seca6g03764 390 MobiDBLite consensus disorder prediction 279 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03764 Seca-Chr6 104956726 104959351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03764 1 373 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 40.887 4.40e-63 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca6g03764 HLH 3.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03764 - - gmx:100807098 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03764 6 104956726 104959351 Seca6g03764 6 104956726 104959351 ECH
Seca6g03765 6 104959392 104960217 Seca6g03764 6 104956726 104959351 PCT