Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03743 ATGAAGAAAGGAAGCTTAGGCCCCAGTCTCAAACTCACTGTTCCTGCATCTGATCAGGATTCTTTTGCCAAGTTCCTGACTGAAAGCGGGACGTTCAGGGATGGGAACCTACTTGTCAATAGGGATGGAGTTCAAATTGTCTCTCAGAGTGAAGTGGAAACTCAACCCCCAATCAGGCCAACAGACAACCAGTTAAATTTGGCAGACATTGATACAATCAAAGTGATTGGAAAGGGTAATGGCGGGATAGTGCAATTGGTGCAACACAAATGGACTAATCAGTTTTTCGCATTAAAGAGAATTCAAATGAATATTGAGGAGTCTGAGTGCAGGCAAATAGCAAAAGAGCTAAAAATCAATCAATCAGCACAATGTCCTTATGTTGTTGTCTGGTACCAGTCATTCTATGAAAATGGTGCCATATCAATAATCTTAGAGTACATGGATGGAGGGTCTTTAGAGGATCTTCTGAAAAAAGTTAAAACAATTCCAGAGCCATATCTTGCTGCCATCTGTAAGCAGGTGCTGAAGGGTTTAATGTATCTTCATCATGAGAAACATATTATCCACAGGGACATGAAAACTTCTAATCTGCTGATAAATCATAGAGGGGAGGTAAAGATTACTGACTTTGGTGTGAGTGCAATCATGGAAAATACATCTGGTCAAGCAAATACTTTCATTGGCACACGCGCCTATATGTCTCCAGAGAGAATAATAGGAAGCCAGAATGGGCACATGTACAACTACAAAAGTGATATATGGAGCTTTGGATTGATGTTGCTCGAGTGTGCTACAGGGAGGTTTCCATATACACCACCAGATCAAAGTGAAGGGTGGGAAAATATGTTCCAGCTTATTGAAGCCATTGTTGAAAAACCTTCACCTAGTGCCCCAGCTGATGAATTTTCTCCAGAATTTTGCTCATTTATCTCAGCATGTTTACAGAAAAATCCAAGGGATAGACCATCAGCTCTGGACCTTATGAGGCATCCTTTTATCACCATGTATGACGACTTGGATGTGGATCTTTCAGCTTATTTCTCCAATGCGGGATCTACACCTGCAACCATATAA 1077 0.4104 MKKGSLGPSLKLTVPASDQDSFAKFLTESGTFRDGNLLVNRDGVQIVSQSEVETQPPIRPTDNQLNLADIDTIKVIGKGNGGIVQLVQHKWTNQFFALKRIQMNIEESECRQIAKELKINQSAQCPYVVVWYQSFYENGAISIILEYMDGGSLEDLLKKVKTIPEPYLAAICKQVLKGLMYLHHEKHIIHRDMKTSNLLINHRGEVKITDFGVSAIMENTSGQANTFIGTRAYMSPERIIGSQNGHMYNYKSDIWSFGLMLLECATGRFPYTPPDQSEGWENMFQLIEAIVEKPSPSAPADEFSPEFCSFISACLQKNPRDRPSALDLMRHPFITMYDDLDVDLSAYFSNAGSTPATI. 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03743 358 Pfam Protein kinase domain 72 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03743 358 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 15 348 - -
Seca6g03743 358 Gene3D Phosphorylase Kinase; domain 1 43 149 - -
Seca6g03743 358 SMART serkin_6 70 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03743 358 FunFam Mitogen-activated protein kinase kinase 6 40 149 - -
Seca6g03743 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Seca6g03743 358 Gene3D Transferase(Phosphotransferase) domain 1 150 356 - -
Seca6g03743 358 SUPERFAMILY Protein kinase-like (PK-like) 71 342 IPR011009 -
Seca6g03743 358 CDD PKc_MAPKK_plant_like 68 338 - -
Seca6g03743 358 ProSiteProfiles Protein kinase domain profile. 70 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03743 358 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Seca6g03743 358 FunFam Mitogen-activated protein kinase kinase 6 151 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03743 Seca-Chr6 104739429 104744086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03743 27 353 MAP Kinase Kinase Gene Family AT4G26070 65.749 1.97e-165 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Seca6g03743 Pkinase 2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03743 K20603 - gmx:100789734 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03743 6 104739429 104744086 Seca6g03743 6 104739429 104744086 ECH
Seca12g00670 12 6038319 6042362 Seca6g03743 6 104739429 104744086 PCT