Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03736 CAAGTACACAACAAACCATATCCACACCCTATATATTTCTTTCTTTACCATCTCTCTTCTCTTTCCCTCTGCTGCACTGCAAATTCTAGAAGGGAAGGGACCCTTCATAAATACCCCTTTCAGCTGCAAAATAGTAGTATCTCTATAGCACACTCCCCATTTCTTCTATTTGCCATTTTTCTTTGCATTGCCCATTCATTGTTAGTGTTAGAACCAACAAACACAGAAAAAAGGGTGAGTGAGGTTATGGACGGTGAAGCGCAGTACAACCCTCGGTCCATCGAGGCGGTTTTCCGGGACTTCAACGGCCGCAGGACTGGCTTGATCAAGGCCCTCACCACTGATGTTGAAGAATTTTACCAGCAGTGCGATCCTGATTATGCAAATCTTTGTCTCTATGGATTTCCCGCTGAACTGTGGGAAGTTAATTTACCCTCTGAAGAATTTCCTCCTGTTATTCCGGAACCTGCACTGGGCATAAATCTTGCTAGGGATGGGATGCAAAAAAAGGACTGGCTATCTTTAGTTGCTGTTCACAGTGATGCATGGCTACTCTCTGGCATTCTTCTTTGGAACAAGATTTGTTATGATGCCTTAATAAGTATATTTTGTATGGAAAGATCTTCAGTCAACAACACAAACTGTCATGAGATTGACAAGACCTGTCTACCACTTGTAGTCCGTAATTCTTCATGTAGGACACGCCTGTTCACTATGATTAATGATCTGCCAACAGTATTTGAGGTTGTTACTGGAACTGCAAAGAAACAGGAAAAGGAAAAGTCATCAGTTTCAAACCACAACAACAACAAATCAAAGTCCAGTGCAAACGGGCGAGGATCTGAATCGGGGGAGTATTCAAAGCAAACAAGGGGTGACAATGAGGGATTGGATGAAGATGAGGAGTATGGGGATTCCTCGTGTGGCACATGTGGGGGAAACTATATACCTACATCTGATGAGTTCTGGATTTGTTGTGACATGTGTGACAGGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCCCGGGCCCTTCACCTCAAAGAGTACAAGTGCCCCCCATGCAGCAAATAA 1077 0.4392 QVHNKPYPHPIYFFLYHLSSLSLCCTANSRREGTLHKYPFQLQNSSISIAHSPFLLFAIFLCIAHSLLVLEPTNTEKRVSEVMDGEAQYNPRSIEAVFRDFNGRRTGLIKALTTDVEEFYQQCDPDYANLCLYGFPAELWEVNLPSEEFPPVIPEPALGINLARDGMQKKDWLSLVAVHSDAWLLSGILLWNKICYDALISIFCMERSSVNNTNCHEIDKTCLPLVVRNSSCRTRLFTMINDLPTVFEVVTGTAKKQEKEKSSVSNHNNNKSKSSANGRGSESGEYSKQTRGDNEGLDEDEEYGDSSCGTCGGNYIPTSDEFWICCDMCDRWFHGKCVKITPARALHLKEYKCPPCSK. 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03736 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 358 IPR013083 -
Seca6g03736 358 CDD PHD_AL_plant 308 357 IPR044104 -
Seca6g03736 358 MobiDBLite consensus disorder prediction 267 285 - -
Seca6g03736 358 SUPERFAMILY FYVE/PHD zinc finger 292 357 IPR011011 -
Seca6g03736 358 Pfam Alfin 94 189 IPR021998 GO:0006355|GO:0042393
Seca6g03736 358 ProSiteProfiles Zinc finger PHD-type profile. 305 358 IPR019787 -
Seca6g03736 358 ProSitePatterns Zinc finger PHD-type signature. 308 356 IPR019786 -
Seca6g03736 358 PANTHER CPG BINDING PROTEIN 90 357 IPR045104 GO:0006355|GO:0042393
Seca6g03736 358 SMART PHD_3 307 357 IPR001965 -
Seca6g03736 358 MobiDBLite consensus disorder prediction 258 301 - -
Seca6g03736 358 Pfam PHD-finger 308 357 IPR019787 -
Seca6g03736 358 FunFam PHD finger alfin-like protein 300 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03736 Seca-Chr6 104663388 104667821 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03736 85 357 Alfin-like Transcription Factor Family AT3G42790 54.152 4.42e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Seca6g03736 Alfin 4.6e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03736 K26274 - rcu:8272513 349.362