Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03735 ATGAAGCCAATTCTCTTTTTGAATCATCCTGATACTGAATTCAATTGTTCACAAGTTGATCATAATCACTCAATGGCTCATGCTCCTTATCCTTATGGAGATCCGATTTTTGCTAGCTCATTAGTTGCTTATGGACCACAGGCTGTTAATCAACCACAAATGCTGCCCCAGATGCTGGGATTAGCATCCACCAGAGTTGCATTACCACTTGATATTGCACAAGATGGGCCTATTTATGTCAATGCAAAACAATACCATGGTATACTGAGAAGGCGGCAGTCACGAGCAAAGCTTGAGGCTCAGAACAAACTCATTAAAAGTCGTAAGCCATATCTTCACGAGTCTCGGCACCGCCATGCTTTAAATCGGGTTAGGGGATCTGGGGGCCGATTTCTCAGCACCAAACAGCTTACACAGTCTAATACAGAATATGTGACCGGTGCACATTCTGGCTCTGGCCCTGTCAACAAATATCAAAAGGAAGATCTATCAAATGTAGAAAGTCATTCCTCAAAAACTGGAGATAATGCATCTTCCATCACAACCTGCTCTGACCGGACATGTTTTTCTGGTAATAGTGTCAATTTTAGGCAGCCAGAGCACATGTTTATGGGAAACTCTACAAACATGAGTGGAGCACCACAATGCAGTGGTGGACTCACCTTTGGTGGAACAAAGCATCGCGCTTCAGTTGTCCGGTGA 702 0.4387 MKPILFLNHPDTEFNCSQVDHNHSMAHAPYPYGDPIFASSLVAYGPQAVNQPQMLPQMLGLASTRVALPLDIAQDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSTKQLTQSNTEYVTGAHSGSGPVNKYQKEDLSNVESHSSKTGDNASSITTCSDRTCFSGNSVNFRQPEHMFMGNSTNMSGAPQCSGGLTFGGTKHRASVVR. 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03735 233 Gene3D - 74 136 - -
Seca6g03735 233 PRINTS CCAAT-binding transcription factor subunit B signature 108 131 IPR001289 GO:0003700|GO:0006355
Seca6g03735 233 PRINTS CCAAT-binding transcription factor subunit B signature 77 99 IPR001289 GO:0003700|GO:0006355
Seca6g03735 233 ProSiteProfiles NF-YA/HAP2 family profile. 74 134 IPR001289 GO:0003700|GO:0006355
Seca6g03735 233 ProSitePatterns NF-YA/HAP2 subunit signature. 79 99 IPR018362 GO:0003677|GO:0016602
Seca6g03735 233 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 77 131 IPR001289 GO:0003700|GO:0006355
Seca6g03735 233 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 10 187 IPR001289 GO:0003700|GO:0006355
Seca6g03735 233 SMART cbf3 73 134 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03735 Seca-Chr6 104657286 104661708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03735 45 140 CCAAT-HAP2 Transcription Factor Family AT1G54160 66.327 6.44e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Seca6g03735 CBFB_NFYA 3.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03735 K08064 - gmx:100793856 384.03