Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03734 ATGCTTACATGCATAGCACGTCCAAAGAAACTCGGGGACGACTCACTGAGTCACCCCGACGATTCGGACTCCAACAACAACAGCGCCTCAAAGAACCACCATGGCATCAAGTCACTAACATATCAGATAAAGGACATGGCGTTGAAGGCATCAGGTGCGTACAAGCACTGCAGCCCATGCGCGCCGCCGCCGAGTCGACTCGGGAGGACGCGGACGTGGGGAAAGGAGATGGAGGCGAGGCTCAAGGGGATCTCCAGCGGGGAGGGAACGCCGCCGACGCCGAGCTCCTCCTCTTCCTCCGCCGTCGGCAGCGGTCGGAGGCTGGTGGTGTTGGAGGAGGAGGACGAGCCTAAGGAGTGGGTGGCGCAGGTGGAGCCTGGCGTTTTGATTACCTTCGTGTCGCTTCCACGTGGCGGGAACGATCTCAAGCGGATACGGTTCAGTCGCGAGATATTTAACAAATGGCAAGCTCAAAGATGGTGGGCAGAGAACTATGACAAGGTCATGGAACTTTACAATGTTCAAAGGCTTAGCCGCCAAGCTTTCCCTCTTCCAACTCCACCAAGGTCTGAAGACGAGAGTTCAAAGCGTGAATCAGTAGAAGACAGCCCTGTGACACCTCCACTGAACAAGGAACGGCTACCTCGTAATTTATACCGCCCAACAGGGACAGGGATGGGAATGGGGTACTCATCCTCAGATTCTTTTGATCATCAGTCAATGCAATCTCGGCAGTACTATGATTCAAATGGCATGAACTCAACCCCAAAGGTTTCCACCATTAGTGCTGCCAAGACAGATATATCATCAATGGATGCTTCTATAAGAAGTAGCTCATCTAGAGAAGCTGATCGCTCTGGTGATCTATCAATCAGCAATGCCAGTGACCTTGATACTGAATGGGTTGAGCAGGATGAACCTGGGGTTTACATTACCATCAGAGCTCTCCCTGGTGGCAAAAGGGAGCTCAGACGAGTCAGGTTCAGCCGAGAAAAATTTGGGGAGATGCATGCTAGAGTATGGTGGGAAGAGAATCGCGCCAGAATACATGAACAATACTTGCGATCAGATGCCAGAAGGGGCGCAACTTGCACCTCTACCTTTTTGGAGGGCCATATACATCCTTAG 1128 0.5222 MLTCIARPKKLGDDSLSHPDDSDSNNNSASKNHHGIKSLTYQIKDMALKASGAYKHCSPCAPPPSRLGRTRTWGKEMEARLKGISSGEGTPPTPSSSSSSAVGSGRRLVVLEEEDEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSREIFNKWQAQRWWAENYDKVMELYNVQRLSRQAFPLPTPPRSEDESSKRESVEDSPVTPPLNKERLPRNLYRPTGTGMGMGYSSSDSFDHQSMQSRQYYDSNGMNSTPKVSTISAAKTDISSMDASIRSSSSREADRSGDLSISNASDLDTEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEMHARVWWEENRARIHEQYLRSDARRGATCTSTFLEGHIHP. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03734 375 MobiDBLite consensus disorder prediction 21 36 - -
Seca6g03734 375 Pfam Transcription factor regulating root and shoot growth via Pin3 299 353 IPR013591 -
Seca6g03734 375 Pfam Transcription factor regulating root and shoot growth via Pin3 118 172 IPR013591 -
Seca6g03734 375 ProSiteProfiles BRX domain profile. 118 173 IPR013591 -
Seca6g03734 375 Pfam Transcription factor BRX N-terminal domain 34 60 IPR027988 -
Seca6g03734 375 MobiDBLite consensus disorder prediction 1 36 - -
Seca6g03734 375 MobiDBLite consensus disorder prediction 181 237 - -
Seca6g03734 375 ProSiteProfiles BRX domain profile. 299 354 IPR013591 -
Seca6g03734 375 MobiDBLite consensus disorder prediction 88 104 - -
Seca6g03734 375 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 354 IPR044532 -
Seca6g03734 375 MobiDBLite consensus disorder prediction 270 292 - -
Seca6g03734 375 MobiDBLite consensus disorder prediction 83 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03734 Seca-Chr6 104636397 104643584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03734 1 354 Major Intrinsic Protein MIP AT1G31880 43.536 3.26e-87 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03734 - - gmx:100794109 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03734 6 104636397 104643584 Seca6g03734 6 104636397 104643584 ECH
Seca12g00656 12 5907547 5913268 Seca6g03734 6 104636397 104643584 PCT