Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03728 ATGCCCTTCACAGCATACTTATGTTTTCCTTCTAGCTATCAAGTTATTACACAGTTCAATGCTACAAGCATGATGCTCACATATTATTCTTGTTTGCAGGTAAAAGTCTACCTTGAACGCCAATCACTTGTACATTCTCTAAATGATGCCAAAACAGCCGTTGATGAATTGAATAAGCTTGCTTCTGTAGTTGTCTTTATAGTGATCATTATTGTGTGGTTACTTTTAATGGGATTCTTAACAACCCAAGTCCTTGTCTTTATTTCATCCCAGCTTTTACTTGTGGTGTTTATGTTTGGCAACACAGCTAGGACTGTGTTTGAAGCTATTGTATTTGTTTTTGTGATGCACCCATTTGATGTTGGTGATCGTTGTGTCATTGATGGTGTTCAGATGGTTGTAGAAGAGATGAATATACTGACTACAGTCTTTTTGAGATATGACAATGAAAAGATATTCTACCCAAATTCAGTTCTAGCAACCAAGCCAATCAGTAACTTCTACAGGAGTCCAGAAATGAGTGATTCAGTTGAATTTGCTGTTGATGTTTCTACTTCAATAGAAAGTATTGGAGCTTTAAAGGCTAGGCTAAAAACATACTTGGAGAATAGGCCTCAACACTGGCGTCCGAACCACAGTGTAATAGTTAAGGATATTGAGAATGTAAACAAGATGAAAATGGCTCTATATGTTACTCACACCATAAATTTTCAAAACTATGGGGATAAGAACAGCCGAAGATCTGAATTAGTCCTGGAGTTAAAGAAAATTCTTGAAGATCTTAATATCAAATATCATCTGTTGCCACAAGAAGTTCATCTCAGTTATGTAAGGTCATAA 840 0.3607 MPFTAYLCFPSSYQVITQFNATSMMLTYYSCLQVKVYLERQSLVHSLNDAKTAVDELNKLASVVVFIVIIIVWLLLMGFLTTQVLVFISSQLLLVVFMFGNTARTVFEAIVFVFVMHPFDVGDRCVIDGVQMVVEEMNILTTVFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSVEFAVDVSTSIESIGALKARLKTYLENRPQHWRPNHSVIVKDIENVNKMKMALYVTHTINFQNYGDKNSRRSELVLELKKILEDLNIKYHLLPQEVHLSYVRS. 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03728 279 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 34 274 IPR016688 -
Seca6g03728 279 FunFam Predicted mechanosensitive ion channel 118 167 - -
Seca6g03728 279 Gene3D - 118 167 IPR023408 -
Seca6g03728 279 Pfam Mechanosensitive ion channel 58 264 IPR006685 GO:0016020|GO:0055085
Seca6g03728 279 SUPERFAMILY Sm-like ribonucleoproteins 108 167 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03728 Seca-Chr6 104592532 104594335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03728 34 275 Mechanosensitive Ion Channel Family AT5G12080 58.678 1.01e-104 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03728 K22048 - gmx:100777332 445.662