Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03719 ATGCAACTAGTAAGCCATTTCAAAACCAATAATAGGGGCATAGTACAGAAAGAGCAACCGAAAATGGAAAGGAAACAGGCCTGTTGTGAAAAACATTTGTTGAAAAGAGATGCTTGGTCTTCTATGGAAGACGAGATCCTTATGAACTATGTTCAAGTCTATGGAGAAGGAAATTGGAGAGACCTTCCCAAAAGAGCTGGCTTGAACCGATGTGGTGAGAGCTGCGAACTCCGATGGTTGAATTATCTGAAACCAACTGGGATCAATAGAGGAAACATTTCTTTGGATGAAGAAGAGCTCATAATCAGACTACATAAGCTCTTAGGGAACAGATGGTCTATCATTGCGGGACGATTGCCAGGACGGACTGAAAATGAGATAGAGAACTTTTGGAATACCCATTTGAGCAAAAAGATGGAAGATGATAATTACAATAATAATGGACTTCCAAATACAAGTGGCATATCTAGTGTTCAATCTTCTCACCCTGGAATAATTAAACCTCAGGCACGAAGGTGTAAGCAAGGTTATCGTGCAGCTCAACATCATGGATTTAACAGCTAA 564 0.4025 MQLVSHFKTNNRGIVQKEQPKMERKQACCEKHLLKRDAWSSMEDEILMNYVQVYGEGNWRDLPKRAGLNRCGESCELRWLNYLKPTGINRGNISLDEEELIIRLHKLLGNRWSIIAGRLPGRTENEIENFWNTHLSKKMEDDNYNNNGLPNTSGISSVQSSHPGIIKPQARRCKQGYRAAQHHGFNS. 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03719 187 Gene3D - 94 157 - -
Seca6g03719 187 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Seca6g03719 187 FunFam MYB-related transcription factor 35 87 - -
Seca6g03719 187 MobiDBLite consensus disorder prediction 142 163 - -
Seca6g03719 187 SMART sant 35 85 IPR001005 -
Seca6g03719 187 SMART sant 89 137 IPR001005 -
Seca6g03719 187 Pfam Myb-like DNA-binding domain 90 135 IPR001005 -
Seca6g03719 187 Pfam Myb-like DNA-binding domain 36 83 IPR001005 -
Seca6g03719 187 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 139 IPR017930 -
Seca6g03719 187 CDD SANT 38 83 IPR001005 -
Seca6g03719 187 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 87 IPR017930 -
Seca6g03719 187 SUPERFAMILY Homeodomain-like 35 131 IPR009057 -
Seca6g03719 187 ProSiteProfiles Myb-like domain profile. 31 83 IPR001005 -
Seca6g03719 187 Gene3D - 33 86 - -
Seca6g03719 187 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 25 156 - -
Seca6g03719 187 CDD SANT 94 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03719 Seca-Chr6 104475960 104483717 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03719 18 139 MYB Transcription Factor Family AT3G13540 59.836 2.03e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca6g03719 Myb_DNA-binding 2.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03719 K09422 - gmx:778159 198.364