Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03717 ATGGGCAGAAGCCCTTGTTGTTCTAAGGAGGGTTTGAACCGAGGTGCCTGGACAGCACAGGAAGACAAAATCCTCCGAGACTATGTTAATCTTCATGGCCAAGGCAAATGGAGGAACCTTCCTCAAAGAGCAGGTTTGAAACGTTGTGGTAAAAGCTGCAGACTTCGATGGTTGAATTATCTCAGACCAGACATTAAGAGAGGCAATATATCCCCAGATGAAGAAGAACTTATCATCAGACTTCACAAGCTCCTAGGAAACAGGTGGTCTCTAATTGCTGGAAGGCTTCCAGGACGAACAGACAATGAGATAAAGAATTACTGGAACACCAATTTAGGTAAAAAGGTTAAAGATGGTGGTAACCCCAACAACAGTACTTCATCTACACAACTCAATGAAAAGAACCAAGAGAAAACAAAGCCTCAATCAGCCTCCAAGGTTGTTACTCCATCATCATCTCCTAATAATAATGTGATCCATACAAAGGCATCCAAGTGTTCCAGGTTGTTGTTTCTAGATCCACTACCGTTTCAAGTTCAACCATCATTGCAATTGCAGAGCAATAGTACTATTTGTGTGGCAGAACAAGTAAAAGCAGAAGCAGAGGCCTTGTTTGTGATGGATGATGATAACAATATGGAGACATGTGGTGAAGATGGGATTTTGTCATTATTTCCCTGTGATGATGAAAAGGACGAACTCTCAACGGATTTGTTGTTGGATTTTGACATTGGAGACATTTGTTTGCCTGATCTTCTCAACTCCGATTTCTCGGAGGTGTGTGATTTTAGTTGCAGCAACAACGTTAACCAAGAGGATCCATTATTACCATTTTCGGACCAACCTCTGGTCTCTGAATCAATGCTTCATGTTGAAATTGTCAAGGATAGGACACAAAAGGACAAAAGTGATGATGACAAAAATGTGGCAAATTAA 936 0.4113 MGRSPCCSKEGLNRGAWTAQEDKILRDYVNLHGQGKWRNLPQRAGLKRCGKSCRLRWLNYLRPDIKRGNISPDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDGGNPNNSTSSTQLNEKNQEKTKPQSASKVVTPSSSPNNNVIHTKASKCSRLLFLDPLPFQVQPSLQLQSNSTICVAEQVKAEAEALFVMDDDNNMETCGEDGILSLFPCDDEKDELSTDLLLDFDIGDICLPDLLNSDFSEVCDFSCSNNVNQEDPLLPFSDQPLVSESMLHVEIVKDRTQKDKSDDDKNVAN. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03717 311 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 178 - -
Seca6g03717 311 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Seca6g03717 311 FunFam MYB-related transcription factor 13 66 - -
Seca6g03717 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca6g03717 311 SMART sant 66 114 IPR001005 -
Seca6g03717 311 SMART sant 13 63 IPR001005 -
Seca6g03717 311 MobiDBLite consensus disorder prediction 116 158 - -
Seca6g03717 311 CDD SANT 16 61 IPR001005 -
Seca6g03717 311 FunFam Transcription factor TT2 70 142 - -
Seca6g03717 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca6g03717 311 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca6g03717 311 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca6g03717 311 CDD SANT 71 112 IPR001005 -
Seca6g03717 311 Gene3D - 14 66 - -
Seca6g03717 311 Gene3D - 70 146 - -
Seca6g03717 311 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca6g03717 311 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca6g03717 311 MobiDBLite consensus disorder prediction 112 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03717 Seca-Chr6 104447074 104449529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03717 1 147 MYB Transcription Factor Family AT2G16720 60.135 4.17e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca6g03717 Myb_DNA-binding 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03717 K09422 - gmx:100802704 344.739