Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03715 ATGATGAACGGAAGAAACAGGTTCCCCTTTACTCCATCACAATGGCAAGAGCTTGAACATCAAGCTCTTATCTACAAGTACATGGCTTCAGGTATCTCTATTCCACCTGATCTTCTCTTCACTATTAGAAGGAGCTATTTGGATTCTCCTTTGTCTACTAGGCTTTTGCCTAACCAGCCACAACATTTTGGATGGAACTATCTTCAGATGGGTTTGGGAAGAAAAATAGACCCTGAGCCAGGTAGGTGTAGAAGAACAGATGGAAAGAAATGGAGATGCTCAAAAGAGGCATATCCAGATTCTAAGTACTGTGAGAGGCACATGCACAGAGGAAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAAACACAAATGCTTCAACATCTGCAATCTCATCAATCACTAAAAATAGTCCTGCACTAACCCCAACCACTCATTCTCTTTCACCCTTTACATCTTCTTCTCTGTCCTCTGAGACAAACCCTCAACATTCTTTCTATGGTTCCCATCTTCAACACTCCTTTCTCTATCATCACCAACCATCAAGGTCATCTGGTATTGGTTTGTCATTTGAAGACAATAGTGCTCCTTTGTTTCTTGACACTGGCTCTTGCTCTCAGACTAACACAGATTGCAGGTATGTTTATGGACAGAAAGAGGATGTAGATGAGCATGCTTTCTTCACAGAGCCTTCTGGTATTATGAAAAGCTTCTCTGCTTCCTCTATGGATGATACTTGGCAACTCACTCCACTTACTATGAGCTCTTCATCTTCTTCTTCAAAACAGAGGAGTTGCTCTGCTTTGTCCAATGATTACTCTTACTTGCAACTTCAGAGCCTCAGTGACCACTCAAAACAGCAAGAGCAAGACCAGAACTGCTACATATTAGGAGGTGAAATCAAGTGTGAGACACTCATGAAACTTGAAAAAGAAGAACCTCAGAAAACAGTTCACCGTTTCTTTGATGAATGGCCCCACAAAGGAAGAGGTTCATGGCTTGATTTGGATGATAAATCATCCACCACCCAACTATCAATTTCCATTCCCACATCTGCTCATGATTTTCCAACTTTCAATTCCAGAACCCACCATGATGGTTGA 1113 0.4151 MMNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIRRSYLDSPLSTRLLPNQPQHFGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTNTNASTSAISSITKNSPALTPTTHSLSPFTSSSLSSETNPQHSFYGSHLQHSFLYHHQPSRSSGIGLSFEDNSAPLFLDTGSCSQTNTDCRYVYGQKEDVDEHAFFTEPSGIMKSFSASSMDDTWQLTPLTMSSSSSSSKQRSCSALSNDYSYLQLQSLSDHSKQQEQDQNCYILGGEIKCETLMKLEKEEPQKTVHRFFDEWPHKGRGSWLDLDDKSSTTQLSISIPTSAHDFPTFNSRTHHDG. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03715 370 Pfam QLQ 9 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca6g03715 370 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca6g03715 370 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Seca6g03715 370 MobiDBLite consensus disorder prediction 135 159 - -
Seca6g03715 370 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca6g03715 370 Pfam WRC 78 120 IPR014977 -
Seca6g03715 370 PANTHER GROWTH-REGULATING FACTOR 5 8 358 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03715 Seca-Chr6 104409329 104411449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03715 7 120 GRF Transcription Factor Family AT3G13960 71.930 1.75e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Seca6g03715 WRC 7.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03715 - - gmx:100781613 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03715 6 104409329 104411449 Seca6g03715 6 104409329 104411449 ECH
Seca12g00642 12 5776353 5777728 Seca6g03715 6 104409329 104411449 PCT