Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03710 ATGGGTCGTATTACTAAATCAAGAACAAATGGTATGATGATCGGTCAAGAGATCGTTTGTTCAAAGGAGGGATTTCGGCGAAAAAAAGATATGGGAATGGAACATAAAAGCCTTGCACATGATGAAACAAGGGTAGGATGCAAAGCAATGTTATATATAAAGAAAAATGAGGATAGATGGCTTGTTTCTAGATTTGTAAGAGATCATAATCATGAACTATTTTCCCCAAGAAGCTCACAGTTTCTTCGAGTGCATAGAAAGAAAACTCAAGTGCAAAAGAAACTTATTGATGTGCTTGATGATTCTGGTTTGCAGCCTAGTAAAATAACATCTGTCTTGTGTACTGAAAGTGGTGGTATTGATAATGTTGGATTTAGTCAACAAAATGTTATTGATTACTTAAGTGCAAGGAGACAAAAACAATTAGAAAAAGGAGATGCTCAATTGATGTTATCATATTTTAAGAATTGCCAATTGAAGAATACTGGGTTTTTTTATGCATTTCAAATGGATGCAGAGGGACAGTTAGCAAATTGCTTTTGGGTTGATTCAAGGTCTAGAATAGCATACAAATATTTTGGTGATGTGGTGACTTTTGATCCAACATACTTAACAAATAGATACAAAATGCCTTTTGTTCCATTCACTGGAGTTAATCATCATCAACAATCAATTCTTTTTGGTTGTGCTCTATTATGGGATGAAACTGAAGAGAGTTTTGTTTGGTTGTTAAGCACTTGGTTAGAAGCAATGGGTGGAGTTTCTCCTAAAACTATTATCACAGATCAAGACGCTGCCATCACTAATGCAGTTGCAAGGGTATTTCCAAAGGTCAATCATCATTATTGCATGTGGCACATTGAGAAAAAGGTACCGGAGTACTTGAACTATATCTATCATGAACACAGTGAGTTTAAAAATCAATTTTACAAGTGCATTCACCAATCTGTTAGTATTGAAGATTTTGAATCTGATTGGGAAGCAATGATAGATAAATATGGGTTGCAGGATAATCAATGGCTAAAGAAAATATACTTTGTTCGAAACAAATGGATTCCTGCTTATGTACGACATAATTTTTGTGCCGGAATGTCTACCACCCAAAGGAGTGAAAGCATGAATAAATTCTTTAAGGATTTTTTGAATTCAAGCACTCCATTAAGCAAGTTTGTTACACAATATGAGAGAGCTCTTGATGCACGTTATAACAAGGAAAGGGAGAAGACTTTCAAGACAATGAATTCAAAACCATTTTTGCGAACATTATATCCCATGGAAGAAGAAGCTTCAAAAACTTATACAAGAAAATTGTTTAGGATATTTCAAGATGAATTGGTTGGCTCTCAATTGTTTACTGCAGAGAAAGTTGGATTTTCCACTGAAGTGTCCACATACAAGGTTCATGAAATTTTAAAAGAGAAACCTAACTATTATGTGGATTTTCATGTTATTTCAAAAGAAGCAAGTTGTGGATGTCACATGTTTGAATTTTTGGGCATTCTTTGTAGACATGTATTAGCTGTATTCATAAAGAAAAAGGTCCATTCTCTCCCTTCAAGGTATATTCTATGTCGATGGACCATTAATGCTAAGAAAGAGAAAGTTAAAGGATTGGCAAGTGATGAATTCCAAGAAGGCGACAACAAAGCTTCTAGTACATTATTGTTTAATAGTGTTATGGTTCAATCTCTTGAACTATCTGAAAGAGCTTCACGGTCAGAAAAGCATCATGATGTTGCAATTCAAGGTTTACAAAAGTTAATTGAAGAGCTTGATCTACTAGAAGTTGAAGAGTCAAAGGAAGAGCATGGTAATTCAACAACTCAAGTTATGCCGAAAGTCTCCAACAATGCTATAACTTTGCGTGATCCTCCACTTGTGGCAACTAAAGGGCGTCCACGAACTTTGCGAATGAAAGGTAGCTTAGAATTGATCAAGAAAGGTTCCTCTACTTGTAGTTATTGTAAGAAAAAAGGCCATAACAAACGTAAATGTCCAAGTTTAAATCAAGCAAGGTGTGATATTATTAATGGTGAAATTCCAGACTCTAATGTTGAAGCTTCTAATTTGGTTGAGTCAAAGGTAATAACATTATTGTTTTATTTGCAATCCTTTATAATTACTATTTTTATCCTAACAATAATTTTGTTACTACTTTATATTGTAGGAAATTGTGGAGGCATAGTAACCACTTCTAGCAAGGTCTCAATATTAATGGTGCAGAGGATGTTATCTTACAACTACTTTGACATCATACTATGTTCTTATACATTCTGA 2277 0.343 MGRITKSRTNGMMIGQEIVCSKEGFRRKKDMGMEHKSLAHDETRVGCKAMLYIKKNEDRWLVSRFVRDHNHELFSPRSSQFLRVHRKKTQVQKKLIDVLDDSGLQPSKITSVLCTESGGIDNVGFSQQNVIDYLSARRQKQLEKGDAQLMLSYFKNCQLKNTGFFYAFQMDAEGQLANCFWVDSRSRIAYKYFGDVVTFDPTYLTNRYKMPFVPFTGVNHHQQSILFGCALLWDETEESFVWLLSTWLEAMGGVSPKTIITDQDAAITNAVARVFPKVNHHYCMWHIEKKVPEYLNYIYHEHSEFKNQFYKCIHQSVSIEDFESDWEAMIDKYGLQDNQWLKKIYFVRNKWIPAYVRHNFCAGMSTTQRSESMNKFFKDFLNSSTPLSKFVTQYERALDARYNKEREKTFKTMNSKPFLRTLYPMEEEASKTYTRKLFRIFQDELVGSQLFTAEKVGFSTEVSTYKVHEILKEKPNYYVDFHVISKEASCGCHMFEFLGILCRHVLAVFIKKKVHSLPSRYILCRWTINAKKEKVKGLASDEFQEGDNKASSTLLFNSVMVQSLELSERASRSEKHHDVAIQGLQKLIEELDLLEVEESKEEHGNSTTQVMPKVSNNAITLRDPPLVATKGRPRTLRMKGSLELIKKGSSTCSYCKKKGHNKRKCPSLNQARCDIINGEIPDSNVEASNLVESKVITLLFYLQSFIITIFILTIILLLLYIVGNCGGIVTTSSKVSILMVQRMLSYNYFDIILCSYTF. 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03710 758 SUPERFAMILY Retrovirus zinc finger-like domains 646 670 IPR036875 GO:0003676|GO:0008270
Seca6g03710 758 Pfam SWIM zinc finger 486 512 IPR007527 GO:0008270
Seca6g03710 758 Pfam FAR1 DNA-binding domain 4 74 IPR004330 -
Seca6g03710 758 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 9 590 IPR031052 GO:0006355
Seca6g03710 758 ProSiteProfiles Zinc finger SWIM-type profile. 477 513 IPR007527 GO:0008270
Seca6g03710 758 SMART 26again6 488 515 IPR006564 GO:0008270
Seca6g03710 758 Pfam MULE transposase domain 196 290 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03710 Seca-Chr6 104351356 104353756 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca6g03710 MULE 4.7e-32 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03710 - - psat:127094135 998.038