Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03700 ATGACCATCATGAAAATCATATGGAAATCAATCTTCCCTGGTTGTTACAAGGGTGAATATCCCTCACCTAAGCCCAAGAAAGTGGTGGCTACAAAGCCAAATTCTTCTCACAGGATTTCTGTAACAGATTTGAGTTATCCCAGCACCACATTTTCAGAGGATCTTTCCATTTCTCTAGCAGGATCTAACCTGCATGTTTTTACAGTTGCTGAACTCAAGGTTATTACACAACACTTCTCTTCAAGTAATTTTCTAGGAGAAGGTGGTTTTGGACCAGTGCATAAGGGGTTCATTGATGACAAGCTTAGGCCTGGTTTAAAGGCTCAGCCTGTGGCTGTTAAGCTCTTGGACTTGGATGGCACTCAAGGCCACAAAGAGTGGTTGACTGAAGTTGTTTTTCTGGGACAACTTAGGCATCCACACCTTGTGAAGCTAATAGGATACTGCTGTGAAGATGAACACAGGCTTCTGGTATATGAGTATTTACCAAGAGGCAGTTTAGAGAATCAATTATTTAGAAGATACTCAGCATCATTACCATGGTCAGTAAGAATGAAAATTGCTGTTGGAGCTGCAAAGGGTCTAGCTTTTCTTCATGAAGCAGAGAAACCAGTCATCTATAGAGATTTCAAAGCTTCCAACATCTTATTAGACTCTTATTTTTTTTATTTATTCTTCCAGGATTACAATGCAAAACTCTCTGATTTTGGGTTGGCAAAAGATGGACCTGAAGGTGATGACACCCATGTTTCAACCAGAGTTATGGGCACACAAGGCTATGCAGCCCCAGAATATGTGATGACAGGTCACTTGACAGCAATGAGTGACGTGTATAGTTTTGGAGTTGTGCTATTGGAGTTGCTAACTGGGAGAAGGTCAGTGGACAAAAATAGACCTCCAAGGGAACAGAACCTAGTGGAATGGGCAAGGCCAATGTTACATGATTCAAGGAAACTTAGTAGGATAATGGATCCTAGACTTGAAGGGCAATTTTCTGAGATGGGAAGTAAAAAAGCAGCTGCATTGGCTTACCAATGTCTCAGCCATAGGCCAAAGAGTAGGCCTACAATGAGAGAAGTGGTTAAGATTCTAGAACCCTTACAAGATTTTGATGATATTCCAATGGGACCCTTTGTTTACACTGTTCCAGCTGATATTAATGAAGTGAATAAAGAAACAAGGGATTATGATTCACCTAAGGAGAGAAGAAGGGAAAATAATGGTCATCATCACAGGAATCACCATAACAGAAATGGTCATAGGCATCATCCACTTAAATCTCCAAAGTCACCAAAGCCACAATCACAGAATGATAGAGTTAGACACCAAAATGGCAGAGGAAGTGGGTCTAATTCTCCTCCATCACATCAGAAAGGCATAGCTTAA 1386 0.4091 MTIMKIIWKSIFPGCYKGEYPSPKPKKVVATKPNSSHRISVTDLSYPSTTFSEDLSISLAGSNLHVFTVAELKVITQHFSSSNFLGEGGFGPVHKGFIDDKLRPGLKAQPVAVKLLDLDGTQGHKEWLTEVVFLGQLRHPHLVKLIGYCCEDEHRLLVYEYLPRGSLENQLFRRYSASLPWSVRMKIAVGAAKGLAFLHEAEKPVIYRDFKASNILLDSYFFYLFFQDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYVMTGHLTAMSDVYSFGVVLLELLTGRRSVDKNRPPREQNLVEWARPMLHDSRKLSRIMDPRLEGQFSEMGSKKAAALAYQCLSHRPKSRPTMREVVKILEPLQDFDDIPMGPFVYTVPADINEVNKETRDYDSPKERRRENNGHHHRNHHNRNGHRHHPLKSPKSPKPQSQNDRVRHQNGRGSGSNSPPSHQKGIA. 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03700 461 PANTHER OS01G0588500 PROTEIN-RELATED 45 368 - -
Seca6g03700 461 FunFam Serine/threonine-protein kinase BIK1 46 161 - -
Seca6g03700 461 Gene3D Transferase(Phosphotransferase) domain 1 162 373 - -
Seca6g03700 461 MobiDBLite consensus disorder prediction 390 461 - -
Seca6g03700 461 ProSiteProfiles Protein kinase domain profile. 79 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03700 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Seca6g03700 461 MobiDBLite consensus disorder prediction 390 404 - -
Seca6g03700 461 Pfam Protein tyrosine and serine/threonine kinase 83 364 IPR001245 GO:0004672|GO:0006468
Seca6g03700 461 MobiDBLite consensus disorder prediction 429 461 - -
Seca6g03700 461 FunFam Probable serine/threonine-protein kinase PBL8 162 380 - -
Seca6g03700 461 SUPERFAMILY Protein kinase-like (PK-like) 63 386 IPR011009 -
Seca6g03700 461 Gene3D Phosphorylase Kinase; domain 1 42 161 - -
Seca6g03700 461 CDD STKc_IRAK 85 367 - -
Seca6g03700 461 MobiDBLite consensus disorder prediction 405 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03700 Seca-Chr6 104297649 104299923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03700 65 364 Glycoside Hydrolase AT3G07070 52.145 5.80e-98 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca6g03700 PK_Tyr_Ser-Thr 2.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03700 - - gmx:100783759 743.421