Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03690 ATGGCATCTGATTCAAACGAACTTGCTTCCAGCAACACGCTCCAGTCCATATGCTACAAGCGCGGTTCCCTTCAGCTTCTTGATCAGAGAAAGCTTCCTCTAGAAACAATCTACTTGGATATTCGGGATTCAACAGATGGCTGGAATGCCATACGGGATATGGTGGTCCGAGGAGCACCTGCTATTGCAATTGCAGCAGCACTCTCCCTGGCTGTGGAGGTGTCCAATTTAGATGATTTTAATGGATCACCCAGTGATGCTGTTTCCTTACTGCAGAAGAAATTAGACTATCTTGTCTCAAGTCGGCCAACTGCAGTGAACCTATCAGATGCTGCAGCAAAACTCAATGAAGTCATATCTAAGGCTTCTGCTACAACTTCAGAGGCCGGGAGTGTTTTTCAGGCTTATGTGGAGGCTGCTGAAATTATGCTAGAGGATGATGTTGCCTCGAATAGAGCAATTGGTTCTTATGGAGCTAGTTTTATTCGACATCAAACAGAGAAACAGAACCTTTCTGTTTTGACCCATTGCAACACTGGAAGTTTAGCTACGGCTGGATATGGTACTGCTCTGGGTGTAATCCGTGCACTTCACAATGGAGGAGTTTTAGAAAGGGCTTATTGCACAGAAACACGCCCATTCAATCAAGGATCTAGACTTACTGCCTATGAGTTGGTACATGAGAAAATTCCAGCAACTCTTATAGCAGATTCTGCTGTGGCTGCATTAATGAAAGCGGGTCGTGTGGATGCTGTTGTTGTTGGGGCAGATCGTGTTGCATCAAACGGTGACACAGCCAACAAAATTGGAACATATAGTGTTGCCTTATGTGCCAAGTTTCATAATGTACCTTTTTATGTGGCTGCTCCCCTGACCTCCATTGATCTATCACTTTCTTCTGGACAAGAAATTGTCATTGAGGAGAGATCTCCCAAGGAATTGTTGAACTCACGTGGTGGACTTGGTGAGCAGGTTGCTGCCTCAGGGATTTCTGTGTGGAATCCGGCGTTTGATGTTACACCTGCTAATCTAATATCTGGGATCATCACTGAGAAGGGTGTCATTACGAAGACATCTGTTGGTGATGCTTTTGACATAAAAGCTTTCATACAGAAAGCAAGTTAA 1125 0.4453 MASDSNELASSNTLQSICYKRGSLQLLDQRKLPLETIYLDIRDSTDGWNAIRDMVVRGAPAIAIAAALSLAVEVSNLDDFNGSPSDAVSLLQKKLDYLVSSRPTAVNLSDAAAKLNEVISKASATTSEAGSVFQAYVEAAEIMLEDDVASNRAIGSYGASFIRHQTEKQNLSVLTHCNTGSLATAGYGTALGVIRALHNGGVLERAYCTETRPFNQGSRLTAYELVHEKIPATLIADSAVAALMKAGRVDAVVVGADRVASNGDTANKIGTYSVALCAKFHNVPFYVAAPLTSIDLSLSSGQEIVIEERSPKELLNSRGGLGEQVAASGISVWNPAFDVTPANLISGIITEKGVITKTSVGDAFDIKAFIQKAS. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03690 374 FunFam Methylthioribose-1-phosphate isomerase 12 203 - -
Seca6g03690 374 FunFam Methylthioribose-1-phosphate isomerase 169 367 - -
Seca6g03690 374 Gene3D - 12 203 IPR027363 -
Seca6g03690 374 SUPERFAMILY NagB/RpiA/CoA transferase-like 12 361 IPR037171 -
Seca6g03690 374 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 15 357 IPR005251 -
Seca6g03690 374 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 11 371 - -
Seca6g03690 374 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 14 366 IPR005251 -
Seca6g03690 374 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 42 357 IPR011559 GO:0044249
Seca6g03690 374 Gene3D - 204 368 IPR042529 -
Seca6g03690 374 Pfam Initiation factor 2 subunit family 56 356 IPR000649 GO:0044237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03690 Seca-Chr6 104174419 104177877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03690 53 372 Eukaryotic Initiation Factors Gene Family AT2G05830 77.570 2.46e-172 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03690 K08963 - gmx:100799311 606.29