Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03684 ATGGCCGCTGTTCTCTTCCTCCTCATTCTCTCTCTCTCCCTCTCTCTCTCTTCCCCAACAGAGACCCAATCCCTTCTGAGGCTCAAACAGTCCTTCACCAACGCTGACGAATCCTTAGCTTCATGGATCCCCAATGTCTCCCCTTGTTCCGGCACATGGGTCGGCGTCGTTTGCTTCAACAACGTCATCACCGGCCTCCATCTCTCCGATCTCAACCTCTCCGGCACCATCGACGTCGAAGCCCTCTCTGAGATTCAAGGCCTCAGAACCCTAAGCTTCGTTAACAACTCCTTCTCTGGCCCCATGCCTGGGTTTCACAAACTTGGCACCATCAAATCCCTCTTACTTACACAAAACCAATTCTCTGGACCCATTCCTCAAGATTTCTTCTCCCATTTAGCTTCCTTAAAGAAAGTTTGGCTCTCTGGTAACAAATTCTCCGGTAACATACCCGTTTCCTTAACCGAACTTGACCTCCTCAAAGAGTTACATCTCGAGTATAATGAGTTTTCAGGGCCTATTCCTAATCTCAATCAAGAGTTTACATCGTTTGATGTGTCCAACAACAAATTAGAAGGTCCAATCCCAGAAAAGTTGTCCAAGTTTGATGCTGTTTCGTTTTCAGGAAATGAAGGACTTTGTGGGAAACCGTTAGATAAGACCTGTGATAGTGATAGTGATAGTTCCACTTCTTTTTCTTCTAATTACTCTGTTTTTCAGAATGGGGGTGGTTATGGTTCTAGTTGGGCGGTGAAGGTGATTGTGATACTCGTTTTGGCGGTTCTTGCGGCGGTGATTTTCCTCTTCGTGAAGTCGAGGCAACGGCGTGATGATGATTTCAGCGTGGTGAGTAGGGATAGTAGTGTGGATGAGATGGTGCAAGTGCATGTGCCTAGTAGCAGGGGATCCTCTGTTTCTTCTTCGAATGCTTCTTATCAACCGGTTGGAAGAAAGGGGGGTGATTCTTCTTCTAAGAGAGGAGGGGCTACGAGGGGTGGGGTTGGGGACCTTGTGATGGTGAATGAGGAAAAGGGGGCGTTTGGTTTGCAGGATTTGATGAAGGCTGCTGCAGAGGTTCTGGGGAATGGTGCTTTGGGATCTGCTTATAAAGCTTCCATGGCGAATGGGTTGTGTGTGGTGGTGAAGAGGATGGGGGAGATGAATAAGATAGGGAGAGATGTGTTTGATGCTGATATGAGACAGTTTGGGAGGATCAGACATAGTAATGTTTTGACTCCTTTGGCTTACCATTACCGCAAGGAGGAGAAGCTTTTTATCACAGAGTACATGCCCAAAGGAAGCTTGTTGTATGTCTTGCATGGTGATAGAGGAACCTTCCATTCTGAGCTGAATTGGCCTACCCGTTTGAAGATTGTTAAGGGAATGGCAAGAGGGTTGGGCTTCCTTTATACAGAGTTTTCTACCTATGACCTGCCCCATGGAAACCTTAAGTCTTGCAATGTTCTACTAACTGATGATTATGAGCCTCTATTAAGTGACTATGCTTTTCAACCACTAATCAACCCCAGTGTTGCAGTGCAGGCAATATTTGCCTATAAAACCCCAGATTATGTACAGTGCCAGAGAGTTACACAGAAGACTGATGTTTACTGCCTTGGAATCATCATTCTCGAAATCATGACAGGGAAATTCCCATCTCAGTATCACAGCAATGGTAAAGGTGGGACTGATGTTGTGCAATGGGTGCTCACAGCAATTTCTGAAGGAAGAGAAGGAGAATTGATTGATCAAGAGTTGAAAAACAACACAAGTTCACTCAATCAGATGCTACAAATTCTCCAAATTGGGGCTGCTTGCACAGAAAGCAACCCTGACCAAAGGCTAAACATGAAGGAAGCCATTAGAAGGATAGAGGAAGTAAAGGTTTAA 1890 0.4561 MAAVLFLLILSLSLSLSSPTETQSLLRLKQSFTNADESLASWIPNVSPCSGTWVGVVCFNNVITGLHLSDLNLSGTIDVEALSEIQGLRTLSFVNNSFSGPMPGFHKLGTIKSLLLTQNQFSGPIPQDFFSHLASLKKVWLSGNKFSGNIPVSLTELDLLKELHLEYNEFSGPIPNLNQEFTSFDVSNNKLEGPIPEKLSKFDAVSFSGNEGLCGKPLDKTCDSDSDSSTSFSSNYSVFQNGGGYGSSWAVKVIVILVLAVLAAVIFLFVKSRQRRDDDFSVVSRDSSVDEMVQVHVPSSRGSSVSSSNASYQPVGRKGGDSSSKRGGATRGGVGDLVMVNEEKGAFGLQDLMKAAAEVLGNGALGSAYKASMANGLCVVVKRMGEMNKIGRDVFDADMRQFGRIRHSNVLTPLAYHYRKEEKLFITEYMPKGSLLYVLHGDRGTFHSELNWPTRLKIVKGMARGLGFLYTEFSTYDLPHGNLKSCNVLLTDDYEPLLSDYAFQPLINPSVAVQAIFAYKTPDYVQCQRVTQKTDVYCLGIIILEIMTGKFPSQYHSNGKGGTDVVQWVLTAISEGREGELIDQELKNNTSSLNQMLQILQIGAACTESNPDQRLNMKEAIRRIEEVKV. 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03684 629 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 6 628 IPR046959 -
Seca6g03684 629 MobiDBLite consensus disorder prediction 296 330 - -
Seca6g03684 629 Gene3D Ribonuclease Inhibitor 18 180 IPR032675 -
Seca6g03684 629 Pfam Leucine rich repeat N-terminal domain 19 58 IPR013210 -
Seca6g03684 629 SUPERFAMILY Protein kinase-like (PK-like) 358 624 IPR011009 -
Seca6g03684 629 SUPERFAMILY L domain-like 19 217 - -
Seca6g03684 629 Gene3D Transferase(Phosphotransferase) domain 1 430 629 - -
Seca6g03684 629 Gene3D Ribonuclease Inhibitor 182 220 IPR032675 -
Seca6g03684 629 Gene3D Phosphorylase Kinase; domain 1 330 429 - -
Seca6g03684 629 ProSiteProfiles Protein kinase domain profile. 354 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03684 629 MobiDBLite consensus disorder prediction 296 318 - -
Seca6g03684 629 Pfam Protein kinase domain 358 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03684 Seca-Chr6 104114729 104117584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03684 1 627 Receptor kinase-like Gene Family AT3G42880 50.696 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca6g03684 Pkinase 2.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03684 - - gmx:100790660 821.231