Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03680 ATGTCGAGCTCATCGGAATACTCGGAGTTTTCCGGCCAGAAACCGGCGAGGGCGCCGGAAAAGTCAACTTTCTCTCAGACTTGTAGTCTATTGAGTCAATATATCAAGGAGAAGGGTAGCTTCGGAGATCTTACCCTCGGGATCACTTGCAACACCGAACCAAGTGGGTCACCTGAGACTTCTTGTCAGTCTGCAACAACCATGAACTTGTTTCCTACCAAGGAAAACAACATCACACCAAAGAACCTGACAGCTATGGATTTGCTCTCTCCACAAGCTGCCTATCATCCCCATTTAGAAGAGATTCCAACCTTGATCAATTCCAATGCAATTAAGTCTGTGAGCAAGGGACCTAAAGCTGCACAGATGACAATCTTTTATGCTGGCCAAGTTATTGTGTTTGATGATTTTCCTGCTGATAAAGCGAATGAGATCATGTCCCTTGCCAGCAAGGGCACATCCCAAAGCCAGAACAACTCTGTTTTCACTTACACACAGAGCCAGCCTTCTTTTCCTCCCAATCTAGTCAGAACATCTGCTGATTCAAGGCCAAGTACTCCAATTATTCCTCCCAGTGTGAATATCATCCCTAGTACTGGCACCAACTCGATTCATGAACACACTCAAGTGTCATCCAGACCTATTGTTTGTGGTAAGTTCTTGAGTTCACTAGCACTAACTCTTGAGATGACTTATTTTGTTCCAGGATCAAGTTTTTCTGACCATGAATTTCCTTTCTGTACAGATCTGCCAATTGCTAGGAAAGCTTCACTTCATCGGTTCCTTGAGAAGAGAAAGGATAGGTAG 807 0.4436 MSSSSEYSEFSGQKPARAPEKSTFSQTCSLLSQYIKEKGSFGDLTLGITCNTEPSGSPETSCQSATTMNLFPTKENNITPKNLTAMDLLSPQAAYHPHLEEIPTLINSNAIKSVSKGPKAAQMTIFYAGQVIVFDDFPADKANEIMSLASKGTSQSQNNSVFTYTQSQPSFPPNLVRTSADSRPSTPIIPPSVNIIPSTGTNSIHEHTQVSSRPIVCGKFLSSLALTLEMTYFVPGSSFSDHEFPFCTDLPIARKASLHRFLEKRKDR. 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03680 268 Pfam Jas motif 251 268 IPR018467 -
Seca6g03680 268 Pfam tify domain 118 150 IPR010399 -
Seca6g03680 268 ProSiteProfiles Tify domain profile. 116 151 IPR010399 -
Seca6g03680 268 SMART tify_2 116 151 IPR010399 -
Seca6g03680 268 MobiDBLite consensus disorder prediction 1 22 - -
Seca6g03680 268 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 17 268 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03680 Seca-Chr6 104075223 104078048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03680 1 268 Tify Gene Family AT1G19180 36.996 1.63e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca6g03680 tify 1.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03680 K13464 - gmx:100801449 337.035