Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03677 ATGGGTTTGCTTCCATTTTCAATGGTTCTATTTCTCTATTTGACCATTGTTCATTCTGTAGTTTATGGGGAGGAAAACGATACCCTAGTGAATGAAAAAAAATCACTTCTTTCATTCATGTCAGGCATTGTTTCTGACCCCAAAAACGTTCTAGAGAGTTGGAAGTCACCTGGTGTTCATGTTTGCAATTGGTATGGTGTCAGATGCAATAATACAATTGATAGGATCATAGAGCTTGATCTTAATGGAAGCTTACTTGGGGGCACCATTTCCCCTGCTCTTGCCAACCTCTCTTTTTTGGAAATTCTTGATCTTTCTCAGAATTTTTTTGTGGGTCACATTCCAAAAGAACTGGGCTATTTAATTCACCTTCGACAACTCAGTTTATCTTGGAATTTTCTTGAAGGGAAAATTCCCTCTGAGTTGGGGTCACTTCATAATTTGTACTACCTTAACATGGGAAGTAATCAGCTGGAAGGTGATATTCCACCATCACTTTTCTGCAATGGGTCTTCCTCACTGAGGTATATAGACCTCTCTAACAACTCCTTGGGGGGACAAATACCCTTGAACAATGAGTGTATCCTCAAAGAGCTTAGGTTCCTCTTACTTTGGTCTAACAAGCTTGTAGGCCAAGTTCCCTTAGCTCTTTCAAACTCCACACAACTTAAATGGCTTGATTTAGAGTCAAATATGTTGAGTGGGGTGCTACCATCTGAGGCTGTAAGTAATTGGCCACAATTACAATTCCTTTACCTATCAAATAATGACTTTGTTAGCCATGATGGTAACACCAACCTTGAACCTTTCTTTTCTTCCTTGATGAATTTGTCTAACATTCAAGTACTGGAGTTGGCGGGAAACAATCTTGGAGGGAAGCTACCTCATACCATTGGTGATCTTCCTACCAGCTTGTTGCAGCTTCACCTAGATGACAATCTCATATATGGTTCTATACCTCCAAACATTGGCAACCTTTTCAATCTGACTCTCCTAAATTTTTCTAGTAACTTGCTAAATGGATCAATACCTCCAAGCCTCTGCCAGATGGGTAGGCTAGAGAGGATTTATTTGTCAAATAATTCACTATTTGGGGAGATTCCTTCAATCCTTGGTGGCATTAAGCATCTGGGACTTCTTGACTTGTCAAGAAACAAGCTTTCTGGTTCAATACCAGACAGTTTTGCTAACCTCTCCCAATTAAGAAAGCTTTTACTTTATGACAACCAGCTTTCTGGAACCATCCCTCCAAGTCTTGGAAAATGTGTCAATTTGGAGATTTTGGACCTATCCCACAACAAGATTTCAGGGATGATCCCTAAACAAGTTGCAGCCTTGGCTAGCCTCAAACTGTACTTGAATTTATCAAGCAATAACTTATATGGGCCTTTACCATTAGAGCTCTCCAAAATGGACATGGTGCTAGCTATTGATCTTTCCATGAACAATCTCTCTGGCAGAATCCCACCACAGCTTGAGAGTTGCATAGCTCTAGAGTACCTTAACCTTTCTGGTAACTCCTTAGAAGGCCCTCTCCCAGATTCATTAGGCCAATTGCCTTATATTCAAGCACTTGATGTGTCTTCAAATCAATTGACTGGGGTAATACCACAGTCCCTTCAGTTGTCCTCCACACTCAAGAAACTAAATTTCTCTTACAATAAATTCTCAGGGAGTGTCTCAAGCAAGGGGAGTTTTTCCTCTTTGACCATAGATTCTTTCCTAGGGAATGATGGTCTCTGTGGCTCAGTAAAAGGCATGCAAAACTGCCACAAGAAACAGAGATATCATTTGGTTCTCTTGTTAATTCCAGTGCTACTATTTGCCACACCCCTGCTGTGCATGTTTGGGTACCCCACAAAAATTAAGTCAAAATTCAAAAAACAATTGACAATAGTTAGCAGAAGGGAATCAGAGGATGAAGATGAGGAAACACAAGAGCTCAAGTACCCAAGAATTTCATATAGAAAACTCATTGAAGCCACTGGAGGATTCAGTTCTTCAAGCCTAATTGGTTCAGGTCAGTTTGGAAAGGTCTACAAAGGAATTCTCCAAGATAATACAAGAATAGCTGTGAAGGTATTAAACACACCAACAGCTGGAGAGATTTCAGGAAGCTTTAAAAGGGAATGCCAAATCCTGAAGAGGACTAGGCACAGAAATTTAATGAGGATAATCACAATTTGCAGCAAAAAAGAGTTCAAGGCTCTTGTTCTTCCACTGATGCCAAATGGTAGCCTTGAGAAGCACTTATATCCAAGCCATGGGTTAAGCCAGAGGCTGCATATGGTTCAGTTAGTGAGGATCTGCAGTGATGTGGCTGAGGGAATGGCTTATCTACACCACTATTCTCCAGTTAGAGTAGTGCACTGTGATCTTAAGCCAAGCAATATACTACTTGATGATGATTTTACAGCTTTGGTAACTGATTTTGGTATTGCAAGGCTTGTCAAAGGTGATGAGAACATGCCCTCTAGTGACTCAACAACATCTTTCAGCTCAACACACGGTCTATTATGTGGCTCTGTTGGTTACATAGCCCCTGAGTATGGAATGGGAAAACATACTTCAACTAAGGGTGATGTTTACAGTTTTGGAGTACTTGTTCTAGAAATAGTGACAGGTAGACGCCCAACAGATGTCCTTATCCATGAAGGCTCTAGCTTGCATGAATGGGTTAAGAGACAATATCCACACAAGCTTGATAACATTGTTAAACAAGCATTGCAAAGGTGCTTTCCTTCTGCCATGTCAACTCACTGTCACAAAATTGGGAAAGATGTTATATTGGAACTCATTGAATTGGGGCTTCTGTGCACAAACCAGAACCCTTCAACAAGACCAAGCATGCTGGATGTGGCCCAAGAAATAGGGAGGTTGAAGGACTACCTCTCTAATAAATCTTCTCTGATTCAAGAAGTCAATGCTATGGTTAATTCTTTCCCCAGGGAAGATAAATTTAGTTGGAAAACAAATAATTAA 2982 0.4048 MGLLPFSMVLFLYLTIVHSVVYGEENDTLVNEKKSLLSFMSGIVSDPKNVLESWKSPGVHVCNWYGVRCNNTIDRIIELDLNGSLLGGTISPALANLSFLEILDLSQNFFVGHIPKELGYLIHLRQLSLSWNFLEGKIPSELGSLHNLYYLNMGSNQLEGDIPPSLFCNGSSSLRYIDLSNNSLGGQIPLNNECILKELRFLLLWSNKLVGQVPLALSNSTQLKWLDLESNMLSGVLPSEAVSNWPQLQFLYLSNNDFVSHDGNTNLEPFFSSLMNLSNIQVLELAGNNLGGKLPHTIGDLPTSLLQLHLDDNLIYGSIPPNIGNLFNLTLLNFSSNLLNGSIPPSLCQMGRLERIYLSNNSLFGEIPSILGGIKHLGLLDLSRNKLSGSIPDSFANLSQLRKLLLYDNQLSGTIPPSLGKCVNLEILDLSHNKISGMIPKQVAALASLKLYLNLSSNNLYGPLPLELSKMDMVLAIDLSMNNLSGRIPPQLESCIALEYLNLSGNSLEGPLPDSLGQLPYIQALDVSSNQLTGVIPQSLQLSSTLKKLNFSYNKFSGSVSSKGSFSSLTIDSFLGNDGLCGSVKGMQNCHKKQRYHLVLLLIPVLLFATPLLCMFGYPTKIKSKFKKQLTIVSRRESEDEDEETQELKYPRISYRKLIEATGGFSSSSLIGSGQFGKVYKGILQDNTRIAVKVLNTPTAGEISGSFKRECQILKRTRHRNLMRIITICSKKEFKALVLPLMPNGSLEKHLYPSHGLSQRLHMVQLVRICSDVAEGMAYLHHYSPVRVVHCDLKPSNILLDDDFTALVTDFGIARLVKGDENMPSSDSTTSFSSTHGLLCGSVGYIAPEYGMGKHTSTKGDVYSFGVLVLEIVTGRRPTDVLIHEGSSLHEWVKRQYPHKLDNIVKQALQRCFPSAMSTHCHKIGKDVILELIELGLLCTNQNPSTRPSMLDVAQEIGRLKDYLSNKSSLIQEVNAMVNSFPREDKFSWKTNN. 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03677 993 ProSiteProfiles Leucine-rich repeat profile. 424 445 IPR001611 GO:0005515
Seca6g03677 993 SUPERFAMILY L domain-like 272 574 - -
Seca6g03677 993 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 645 741 - -
Seca6g03677 993 SUPERFAMILY Protein kinase-like (PK-like) 645 955 IPR011009 -
Seca6g03677 993 Gene3D Ribonuclease Inhibitor 264 598 IPR032675 -
Seca6g03677 993 Gene3D Ribonuclease Inhibitor 195 263 IPR032675 -
Seca6g03677 993 SMART serkin_6 665 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03677 993 Pfam Leucine Rich Repeat 123 145 IPR001611 GO:0005515
Seca6g03677 993 Pfam Leucine Rich Repeat 498 518 IPR001611 GO:0005515
Seca6g03677 993 Pfam Leucine rich repeat 198 258 IPR001611 GO:0005515
Seca6g03677 993 FunFam Leucine-rich repeat receptor protein kinase EMS1 270 366 - -
Seca6g03677 993 Pfam Leucine Rich repeats (2 copies) 400 436 IPR025875 -
Seca6g03677 993 FunFam Leucine-rich repeat receptor-like protein kinase 29 190 - -
Seca6g03677 993 ProSiteProfiles Protein kinase domain profile. 665 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03677 993 Gene3D Ribonuclease Inhibitor 29 194 IPR032675 -
Seca6g03677 993 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Seca6g03677 993 SUPERFAMILY RNI-like 78 364 - -
Seca6g03677 993 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 367 594 - -
Seca6g03677 993 Gene3D Transferase(Phosphotransferase) domain 1 742 981 - -
Seca6g03677 993 ProSitePatterns Protein kinases ATP-binding region signature. 671 693 IPR017441 GO:0005524
Seca6g03677 993 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672|GO:0006468
Seca6g03677 993 PANTHER RECEPTOR-LIKE PROTEIN 55 308 958 - -
Seca6g03677 993 CDD STKc_IRAK 671 960 - -
Seca6g03677 993 SMART LRR_typ_2 326 350 IPR003591 -
Seca6g03677 993 SMART LRR_typ_2 97 121 IPR003591 -
Seca6g03677 993 SMART LRR_typ_2 398 422 IPR003591 -
Seca6g03677 993 SMART LRR_typ_2 519 542 IPR003591 -
Seca6g03677 993 SMART LRR_typ_2 423 446 IPR003591 -
Seca6g03677 993 SMART LRR_typ_2 374 397 IPR003591 -
Seca6g03677 993 SMART LRR_typ_2 145 169 IPR003591 -
Seca6g03677 993 SMART LRR_typ_2 277 301 IPR003591 -
Seca6g03677 993 Pfam Protein kinase domain 667 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03677 993 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 742 969 - -
Seca6g03677 993 Gene3D Phosphorylase Kinase; domain 1 625 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03677 Seca-Chr6 104031004 104034350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03677 32 962 Receptor kinase-like Gene Family AT3G47570 35.471 2.93e-164 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca6g03677 Pkinase 8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03677 - - gmx:100792446 1389.79