Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03675 ATGGTGAAGCAGAGTGTGGAAAAACCTGCGGCAGAGCGAAGTGATTCCTTGTACCGTGGAGTACGGAAGAGGAAGTGGGGAAAATTTGTGTCTGAAATCAGATTACCCAACAGTCGCCAGAGGATATGGTTAGGTTCCTACGACACCGCCGAAAAGGCAGCGCGTGCCTTCGATGCTGCCATGTTCTGCTTACGTGGCAGTTCGGGAAGGTTTAACTTCCCCGGTGACTTGCCTGACATCACTGACGGAAGGTCCATGACCCACTCTCAAATTCAGACCGCTGCTGCCCGTTTTGCCCATACGGAGCCCCGGAAGAATTACACGGGTCAACCCGTTACAATTCCGCAGGAATCTTTCTCTTCGTCGGAGGGGACTATTTCACTGCCTATGGAGTCGCCGTCTCCCCCTCTCTCTGAGGTTACGGTTCAGACAGATTATGACGTCACGGCAAGCGAGTCGCTTTCGGATCTGTTTTCGGTTATTGGGTCGGGTAATTTTGAACCCGATTACTCTGTTTTTCCGGGTTTCGATGATTTTGGCAGCGATTTCTACGTGCCGGAGCTGCCAAGTTTTGATTATGGAGCAGAGAATATGGACGGGTTGATAATTGAGGGCTCGTTCTTGTGGAATTTCTAA 636 0.5079 MVKQSVEKPAAERSDSLYRGVRKRKWGKFVSEIRLPNSRQRIWLGSYDTAEKAARAFDAAMFCLRGSSGRFNFPGDLPDITDGRSMTHSQIQTAAARFAHTEPRKNYTGQPVTIPQESFSSSEGTISLPMESPSPPLSEVTVQTDYDVTASESLSDLFSVIGSGNFEPDYSVFPGFDDFGSDFYVPELPSFDYGAENMDGLIIEGSFLWNF. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03675 211 CDD AP2 16 74 IPR001471 GO:0003700|GO:0006355
Seca6g03675 211 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Seca6g03675 211 FunFam Ethylene-responsive transcription factor 2 16 75 - -
Seca6g03675 211 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Seca6g03675 211 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Seca6g03675 211 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Seca6g03675 211 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Seca6g03675 211 MobiDBLite consensus disorder prediction 106 138 - -
Seca6g03675 211 MobiDBLite consensus disorder prediction 105 138 - -
Seca6g03675 211 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 127 - -
Seca6g03675 211 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Seca6g03675 211 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03675 Seca-Chr6 104010904 104011539 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03675 16 211 AP2-EREBP Transcription Factor Family AT1G19210 47.264 1.32e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca6g03675 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03675 - - gmx:100813688 265.388